View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2528_low_5 (Length: 253)
Name: NF2528_low_5
Description: NF2528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2528_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 5677267 - 5677044
Alignment:
| Q |
19 |
tttcccgcactgacacatataattacatttaacgagtgtctatgtgttagtgttgtgatgattttcatatctgtgtcggtgctccataggtagaaatctc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5677267 |
tttcccgcactgacacatataattacatttaacgagtgtctatgtgttagtgttgtgatgattttcatatttgtgtcggtgctccataggtagaaatctc |
5677168 |
T |
|
| Q |
119 |
cttgtttgcaaaagaaaagaagaacacaattactatgattgtagtatataagatacatgttttgaaaaatgcgaacattaattagacctttatacactca |
218 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5677167 |
ct-gtttgcaaaagaaaagaagaacacaattactatgattgcagtatataagatacatgttttgaaaaatgcgaacattaattagacctttatacactca |
5677069 |
T |
|
| Q |
219 |
aaagcattgtaacttagcttttctt |
243 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5677068 |
aaagcattgtaacttagcttttctt |
5677044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University