View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2529_high_1 (Length: 692)
Name: NF2529_high_1
Description: NF2529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2529_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 341 - 598
Target Start/End: Original strand, 5828268 - 5828525
Alignment:
| Q |
341 |
aataaggagataatcaaccaaacagacaaatcaacagagtgagaatcaataatcaatcaaacataagaagaagcaaccaaagagagaaatcaaaccaaat |
440 |
Q |
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| T |
5828268 |
aataaagagataatcaaccaaacagacaaatcaacagagtgagaatcaataataaatcaaacacaagaagaagcaaccaaagagagaaatcaaaccaaat |
5828367 |
T |
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| Q |
441 |
caaacaatcaaccatagaaattgcattgtcaaagtggttatttatccaaatcccacatcgggtagtaagaagacaaaataagtagatggttattaaaaat |
540 |
Q |
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| T |
5828368 |
caaacaatcaaccatagaaattgcagtgtcaaagtggttatttatccaaatcccacatcgggtagtaagaagacaaaataagtagatggttattaaaaat |
5828467 |
T |
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| Q |
541 |
atagagttatattgagttttcttcaccataacatctctagtatcttggatggacttgc |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5828468 |
atagagttatattgagttttcttcaccataacatctctagtatcttggatggacttgc |
5828525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 10 - 132
Target Start/End: Original strand, 5827853 - 5827975
Alignment:
| Q |
10 |
aataatatcaaaaccataacataagaaaactagagttgcaataaaatatatagcaaaacctaaacatactctacaatattagaaatataggcccaataac |
109 |
Q |
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| T |
5827853 |
aataatatcaaaaccataacataagaaaactagagttgcaataaaatatatagcaaaacctaaacatactctacaatattagaaatataggcccaataac |
5827952 |
T |
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| Q |
110 |
ttattatcttcatatttcccctg |
132 |
Q |
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| T |
5827953 |
ttattatcttcatatttcccctg |
5827975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 5828109 - 5828171
Alignment:
| Q |
185 |
agagagagagttaaatagaagaaatcaataaggataagatcaatcaaacataagaaccaatat |
247 |
Q |
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| T |
5828109 |
agagagtgagttaaatagaagaaatcaataaggataagatcaatcaaacataagaaccaatat |
5828171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 467 - 588
Target Start/End: Complemental strand, 6853560 - 6853441
Alignment:
| Q |
467 |
tgtcaaagtggttatttatccaaatcccacatcgggtagtaagaagacaaaataagtagatggttattaaaaatatagagttatattgagttttcttcac |
566 |
Q |
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||||||||||| |||| |||||| || |||||||||| || |||||| |||| | || || | |||||| ||||| ||||||||||| | ||||||||| |
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| T |
6853560 |
tgtcaaagtggatattcatccaagtcgcacatcgggtggtgagaagaaaaaagaggttgaggcttattataaata--gagttatattgtgatttcttcac |
6853463 |
T |
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| Q |
567 |
cataacatctctagtatcttgg |
588 |
Q |
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|| |||||||||||| |||||| |
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| T |
6853462 |
cacaacatctctagtctcttgg |
6853441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 528 - 581
Target Start/End: Complemental strand, 32496079 - 32496026
Alignment:
| Q |
528 |
ggttattaaaaatatagagttatattgagttttcttcaccataacatctctagt |
581 |
Q |
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| T |
32496079 |
ggttattataaatatagagttaaattgagttttcttcactttaacttctctagt |
32496026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 567
Target Start/End: Original strand, 31105937 - 31105967
Alignment:
| Q |
537 |
aaatatagagttatattgagttttcttcacc |
567 |
Q |
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| T |
31105937 |
aaatatagagttatattgagttttcttcacc |
31105967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 439
Target Start/End: Original strand, 6901177 - 6901210
Alignment:
| Q |
406 |
agaagaagcaaccaaagagagaaatcaaaccaaa |
439 |
Q |
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| T |
6901177 |
agaagaagcaaccaaagagtgaaatcaaaccaaa |
6901210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 545 - 573
Target Start/End: Complemental strand, 29205609 - 29205581
Alignment:
| Q |
545 |
agttatattgagttttcttcaccataaca |
573 |
Q |
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| T |
29205609 |
agttatattgagttttcttcaccataaca |
29205581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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