View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2529_high_2 (Length: 647)

Name: NF2529_high_2
Description: NF2529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2529_high_2
NF2529_high_2
[»] chr1 (3 HSPs)
chr1 (329-646)||(5828268-5828585)
chr1 (1-120)||(5827856-5827975)
chr1 (173-235)||(5828109-5828171)
[»] chr2 (1 HSPs)
chr2 (455-576)||(6853441-6853560)
[»] chr8 (1 HSPs)
chr8 (516-569)||(32496026-32496079)
[»] chr6 (1 HSPs)
chr6 (525-555)||(31105937-31105967)
[»] chr7 (1 HSPs)
chr7 (394-427)||(6901177-6901210)
[»] chr3 (1 HSPs)
chr3 (533-561)||(29205581-29205609)


Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-169; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 329 - 646
Target Start/End: Original strand, 5828268 - 5828585
Alignment:
Q  329 aataaggagataatcaaccaaacagacaaatcaacagagtgagaatcaataatcaatcaaacataagaagaagcaaccaaagagagaaatcaaaccaaat 428  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  5828268 aataaagagataatcaaccaaacagacaaatcaacagagtgagaatcaataataaatcaaacacaagaagaagcaaccaaagagagaaatcaaaccaaat 5828367  T
Q  429 caaacaatcaaccatagaaattgcattgtcaaagtggttatttatccaaatcccacatcgggtagtaagaagacaaaataagtagatggttattaaaaat 528  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5828368 caaacaatcaaccatagaaattgcagtgtcaaagtggttatttatccaaatcccacatcgggtagtaagaagacaaaataagtagatggttattaaaaat 5828467  T
Q  529 atagagttatattgagttttcttcaccataacatctctagtatcttggatggacttgcgactcgggtaattgtatgtcatgagagagtttgcaattttgt 628  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5828468 atagagttatattgagttttcttcaccataacatctctagtatcttggatggacttgcgactcgggtaattgtatgtcatgagagagtttgcaattttgt 5828567  T
Q  629 cctttgtaattttctgag 646  Q
    ||||||||||||||||||    
T  5828568 cctttgtaattttctgag 5828585  T

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Target: chr1; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 5827856 - 5827975
Alignment:
Q  1 aatatcaaaaccataacataagaaaactagagttgcaataaaatatatagcaaaacctaaacatactctacaatattagaaatataggcccaataactta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5827856 aatatcaaaaccataacataagaaaactagagttgcaataaaatatatagcaaaacctaaacatactctacaatattagaaatataggcccaataactta 5827955  T
Q  101 ttatcttcatatttcccctg 120  Q
    ||||||||||||||||||||    
T  5827956 ttatcttcatatttcccctg 5827975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 5828109 - 5828171
Alignment:
Q  173 agagagagagttaaatagaagaaatcaataaggataagatcaatcaaacataagaaccaatat 235  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5828109 agagagtgagttaaatagaagaaatcaataaggataagatcaatcaaacataagaaccaatat 5828171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 455 - 576
Target Start/End: Complemental strand, 6853560 - 6853441
Alignment:
Q  455 tgtcaaagtggttatttatccaaatcccacatcgggtagtaagaagacaaaataagtagatggttattaaaaatatagagttatattgagttttcttcac 554  Q
    ||||||||||| |||| |||||| || |||||||||| || |||||| |||| | || || | |||||| |||||  ||||||||||| | |||||||||    
T  6853560 tgtcaaagtggatattcatccaagtcgcacatcgggtggtgagaagaaaaaagaggttgaggcttattataaata--gagttatattgtgatttcttcac 6853463  T
Q  555 cataacatctctagtatcttgg 576  Q
    || |||||||||||| ||||||    
T  6853462 cacaacatctctagtctcttgg 6853441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 516 - 569
Target Start/End: Complemental strand, 32496079 - 32496026
Alignment:
Q  516 ggttattaaaaatatagagttatattgagttttcttcaccataacatctctagt 569  Q
    |||||||| ||||||||||||| ||||||||||||||||  |||| ||||||||    
T  32496079 ggttattataaatatagagttaaattgagttttcttcactttaacttctctagt 32496026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 525 - 555
Target Start/End: Original strand, 31105937 - 31105967
Alignment:
Q  525 aaatatagagttatattgagttttcttcacc 555  Q
    |||||||||||||||||||||||||||||||    
T  31105937 aaatatagagttatattgagttttcttcacc 31105967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 427
Target Start/End: Original strand, 6901177 - 6901210
Alignment:
Q  394 agaagaagcaaccaaagagagaaatcaaaccaaa 427  Q
    ||||||||||||||||||| ||||||||||||||    
T  6901177 agaagaagcaaccaaagagtgaaatcaaaccaaa 6901210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 561
Target Start/End: Complemental strand, 29205609 - 29205581
Alignment:
Q  533 agttatattgagttttcttcaccataaca 561  Q
    |||||||||||||||||||||||||||||    
T  29205609 agttatattgagttttcttcaccataaca 29205581  T

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