View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2529_low_10 (Length: 319)
Name: NF2529_low_10
Description: NF2529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2529_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 3 - 257
Target Start/End: Original strand, 26084593 - 26084847
Alignment:
| Q |
3 |
ctcatggactcaacatctgaatcacggtatagatgatcaaaaggattctgcaaatatacaatgtcgatgtctgaaagaagaacactatatcccaactgca |
102 |
Q |
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| T |
26084593 |
ctcatggactcaacatccgaatcacggtataaatgatcaaaaggattctgcaaatatacaatgtcgatgtctgatagaagaacactatatcccaactgca |
26084692 |
T |
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| Q |
103 |
aaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagtatcaatatcattatccgggtctctttggtaaaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26084693 |
aaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagtatcaatatcattatccgggtctctttggtaaaa |
26084792 |
T |
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| Q |
203 |
tgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaact |
257 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
26084793 |
tgggactttattagattcacaaaattttgcaatctcatcgtctaaggcaacaact |
26084847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 26096866 - 26097122
Alignment:
| Q |
1 |
cactcatggactcaacatctgaatcacggtatagatgatcaaaaggattctgcaaatatacaatgtcgatgtctgaaagaagaacactatatcccaactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26096866 |
cactcatggactcaacatctgaatcacggtatagatgatcaaaaggattctgcaaatatacaatgtcgatgtctgaaagaagaacactatatcccaactg |
26096965 |
T |
|
| Q |
101 |
caaaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagtatcaatatcattatccgggtctctttggtaa |
200 |
Q |
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||||||||||||||||||| ||||||| ||| |||||||||| | ||||| ||||||||||||||||||| | |||| |||||||||||||||||| |
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| T |
26096966 |
caaaaattctcttagaatatgaaatttgagcgtggagacagccgcgccgttgaccatttttccaacagtatcaaaaccattgtccgggtctctttggtaa |
26097065 |
T |
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| Q |
201 |
aatgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaact |
257 |
Q |
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|||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| |
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| T |
26097066 |
aatgggactttattcgattcacaaaactttgcaatctcatcgtctaaggcaacaact |
26097122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 257
Target Start/End: Original strand, 26120155 - 26120409
Alignment:
| Q |
3 |
ctcatggactcaacatctgaatcacggtatagatgatcaaaaggattctgcaaatatacaatgtcgatgtctgaaagaagaacactatatcccaactgca |
102 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |
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| T |
26120155 |
ctcatggactcaacatccgaatcacggtatagatgatcaaaaggattctgcaaatatacaatatcgatgtctgatagaagaacactgtatcccaactgca |
26120254 |
T |
|
| Q |
103 |
aaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagtatcaatatcattatccgggtctctttggtaaaa |
202 |
Q |
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||||||||||||||||||| ||||| || | |||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
26120255 |
aaaattctcttagaatacggaatttgagactggagacagcctcgccgtttggaatttttccaacagtatcaataccattatccgggtctcttttgtaaaa |
26120354 |
T |
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| Q |
203 |
tgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaact |
257 |
Q |
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|||||||| ||| |||||||||| ||||||||||||| |||||||||||||||| |
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| T |
26120355 |
tgggacttgattcgattcacaaaactttgcaatctcatcgtctaaggcaacaact |
26120409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 3 - 257
Target Start/End: Original strand, 26064868 - 26065122
Alignment:
| Q |
3 |
ctcatggactcaacatctgaatcacggtatagatgatcaaaaggattctgcaaatatacaatgtcgatgtctgaaagaagaacactatatcccaactgca |
102 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||| ||| ||||||| |||||||| |||||||||| ||||| |
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| T |
26064868 |
ctcatggactcaacatccgaatcacggtataaatgatcaaaaggattctgcaaatatataatatcggtgtctgatagaagaacgctatatcccagctgca |
26064967 |
T |
|
| Q |
103 |
aaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagtatcaatatcattatccgggtctctttggtaaaa |
202 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||||||| ||||||| |||||||||||||||||| |||||| |
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| T |
26064968 |
aaaattcccttagaatacgaaatttaagcccggagacagccgttctctttcctctttttccaacagcatcaataccattatccgggtctcttttgtaaaa |
26065067 |
T |
|
| Q |
203 |
tgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaact |
257 |
Q |
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|
|||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
26065068 |
tgggacttgattcaattcacaaaactttgcaatctcatcgtctaaggcaacaact |
26065122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 3 - 257
Target Start/End: Original strand, 26126812 - 26127066
Alignment:
| Q |
3 |
ctcatggactcaacatctgaatcacggtatagatgatcaaaaggattctgcaaatatacaatgtcgatgtctgaaagaagaacactatatcccaactgca |
102 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
26126812 |
ctcatggactctacatccgaatcacggtatagatgatcaaaaggattctgcaaatatacaatgtcgatgtctgatagaagaacgctatatcccaactgca |
26126911 |
T |
|
| Q |
103 |
aaaattctcttagaatacgaaatttaagcccggagacagccccaccgtttggaatttttccaacagtatcaatatcattatccgggtctctttggtaaaa |
202 |
Q |
| |
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|||||||||||| |||||||||||||||||| ||||||||| | | | ||||||||||||||||||||| ||| |||||||||||||| |||||| |
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| T |
26126912 |
aaaattctcttaaaatacgaaatttaagcccagagacagccgctctccctcctatttttccaacagtatcaatagcatcatccgggtctcttttgtaaaa |
26127011 |
T |
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| Q |
203 |
tgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaact |
257 |
Q |
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||||||||||| |||||||||| |||| ||| |||| |||||||||||||||| |
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| T |
26127012 |
cgggactttatttgattcacaaaactttgaaatttcatcgtctaaggcaacaact |
26127066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 26036218 - 26036474
Alignment:
| Q |
1 |
cactcatggactcaacatctgaatcacggtatagatgatcaaaaggattctgcaaatatacaatgtcgatgtctgaaagaagaacactatatcccaactg |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||| | ||||||| |||||||||||| |
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| T |
26036218 |
cactcatggactcgacatctgaatcacggtatagatgatcaaaaggattctgtaaatatacaatgtcaacgtctgataagagaacaccatatcccaactg |
26036317 |
T |
|
| Q |
101 |
caaaaattctcttagaatacgaaatttaagcccggagacagc------cccaccgtttggaatttttccaacagtatcaatatcattatccgggtctctt |
194 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||| || |||||| ||| ||| ||||||||| |
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| T |
26036318 |
caaaaattctcttagaatacgaaatttaagcccggagacagcatggttccctcc--ttg----ttttccaatggtgtcaataccatcatctgggtctctt |
26036411 |
T |
|
| Q |
195 |
tggtaaaatgggactttattaaattcacaaaattttgcaatctcattgtctaaggcaacaact |
257 |
Q |
| |
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| |||||||||||||| ||| |||||||||||||| |||||||| |||||| ||||||||| |
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| T |
26036412 |
ttgtaaaatgggacttgatttgtttcacaaaattttgaaatctcatcgtctaaagcaacaact |
26036474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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