View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2529_low_13 (Length: 280)

Name: NF2529_low_13
Description: NF2529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2529_low_13
NF2529_low_13
[»] chr4 (2 HSPs)
chr4 (1-241)||(2394487-2394727)
chr4 (158-236)||(54046933-54047011)
[»] chr5 (2 HSPs)
chr5 (158-241)||(25724018-25724102)
chr5 (158-241)||(12370256-12370339)
[»] chr1 (1 HSPs)
chr1 (159-236)||(11895618-11895695)
[»] scaffold0054 (1 HSPs)
scaffold0054 (159-203)||(18598-18642)
[»] scaffold0050 (1 HSPs)
scaffold0050 (122-202)||(77770-77850)
[»] chr7 (1 HSPs)
chr7 (146-202)||(38175633-38175689)
[»] chr3 (1 HSPs)
chr3 (159-203)||(10494277-10494321)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2394487 - 2394727
Alignment:
Q  1 tactacaccacagcttaagcaagactttaagtgaattcaacaaattctgaaatttcaatttcaaacaaggaattgcaaatgattaattacaagacattca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2394487 tactacaccacagcttaagcaagactttaagtgaattcaacaaattctgaaatttcattttcaaacaaggaattgcaaatgattaattacaagacattca 2394586  T
Q  101 aaacaaagaaagttaaggtttaagagattgtaatgaacttggtcttgttgtcttgctaatagaaatatgttagttggcaaggcagcaagatcaagctcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2394587 aaacaaagaaagttaaggtttaagagattgtaatgaacttggtcttgttgtcttgctaatagaaatatgttagttgacaaggcagcaagatcaagctcaa 2394686  T
Q  201 aaccatttcctggtacaccatgtctttcatcattatattgt 241  Q
    ||| ||||| |||||||||||||||||||||||||| ||||    
T  2394687 aacaatttcttggtacaccatgtctttcatcattattttgt 2394727  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 54047011 - 54046933
Alignment:
Q  158 aatagaaatatgttagttggcaaggcagcaagatcaagctcaaaaccatttcctggtacaccatgtctttcatcattat 236  Q
    ||||||| || || ||||||||||| ||| |||||||| ||||||  | ||| ||||||||| ||||||| ||||||||    
T  54047011 aatagaattacgtcagttggcaaggtagcgagatcaagttcaaaaatacttcttggtacaccttgtcttttatcattat 54046933  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 25724018 - 25724102
Alignment:
Q  158 aatagaaatatgttagttggcaaggcagcaagatcaagctcaaaaccat-ttcctggtacaccatgtctttcatcattatattgt 241  Q
    |||| |||||||| ||||||||||||||||||||| | |||||||| ||  || ||  ||||||||| |||||||||||| ||||    
T  25724018 aatataaatatgtcagttggcaaggcagcaagatctaactcaaaacaatcctcttgaaacaccatgtatttcatcattatgttgt 25724102  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 12370339 - 12370256
Alignment:
Q  158 aatagaaatatgttagttggcaaggcagcaagatcaagctcaaaaccatttcctggtacaccatgtctttcatcattatattgt 241  Q
    ||||||||||||| |||||| |||||||| ||||||| ||||||| ||  || ||  ||| | |||||||||||||||| ||||    
T  12370339 aatagaaatatgtcagttggtaaggcagcgagatcaaactcaaaaacacatcttgaaacatcttgtctttcatcattattttgt 12370256  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 11895695 - 11895618
Alignment:
Q  159 atagaaatatgttagttggcaaggcagcaagatcaagctcaaaaccatttcctggtacaccatgtctttcatcattat 236  Q
    |||||||||||||||||| ||||| ||| |||||||| | |||| || ||| ||| | ||| || |||||||||||||    
T  11895695 atagaaatatgttagttgacaaggtagcgagatcaagttaaaaaacacttcttggaataccttgcctttcatcattat 11895618  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 18598 - 18642
Alignment:
Q  159 atagaaatatgttagttggcaaggcagcaagatcaagctcaaaac 203  Q
    |||||||||| | ||||||||||||||||||||| | ||||||||    
T  18598 atagaaatatctcagttggcaaggcagcaagatctaactcaaaac 18642  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 202
Target Start/End: Complemental strand, 77850 - 77770
Alignment:
Q  122 aagagattgtaatgaacttggtcttgttgtcttgctaatagaaatatgttagttggcaaggcagcaagatcaagctcaaaa 202  Q
    ||||| |||| ||||||| | ||||| || | ||| ||||||||||||| ||||| |||||||| | ||||||| ||||||    
T  77850 aagaggttgttatgaactcgatcttgctgccctgccaatagaaatatgtcagttgacaaggcagtaggatcaagttcaaaa 77770  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 38175633 - 38175689
Alignment:
Q  146 tgttgtcttgctaatagaaatatgttagttggcaaggcagcaagatcaagctcaaaa 202  Q
    ||||||||||| | ||||||||||| |||||| ||| || ||||||| |||||||||    
T  38175633 tgttgtcttgccattagaaatatgtcagttggaaagacaacaagatctagctcaaaa 38175689  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 10494277 - 10494321
Alignment:
Q  159 atagaaatatgttagttggcaaggcagcaagatcaagctcaaaac 203  Q
    |||||||||| | ||||||||||||||||||||| | ||||||||    
T  10494277 atagaaatatctcagttggcaaggcagcaagatctaactcaaaac 10494321  T

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