View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2529_low_16 (Length: 259)

Name: NF2529_low_16
Description: NF2529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2529_low_16
NF2529_low_16
[»] chr4 (9 HSPs)
chr4 (1-253)||(14173937-14174185)
chr4 (1-253)||(14178691-14178939)
chr4 (1-253)||(28606923-28607171)
chr4 (1-253)||(28611685-28611933)
chr4 (1-253)||(44161586-44161832)
chr4 (25-245)||(11104477-11104692)
chr4 (5-191)||(48826819-48827000)
chr4 (9-84)||(48708181-48708256)
chr4 (17-92)||(24726306-24726381)
[»] chr8 (3 HSPs)
chr8 (1-253)||(12930676-12930924)
chr8 (1-253)||(12935422-12935670)
chr8 (33-92)||(26504996-26505055)
[»] chr1 (1 HSPs)
chr1 (1-253)||(34907139-34907387)
[»] chr7 (5 HSPs)
chr7 (1-253)||(37040543-37040791)
chr7 (1-242)||(15290243-15290476)
chr7 (35-246)||(12082022-12082227)
chr7 (1-192)||(12099060-12099247)
chr7 (44-92)||(2757370-2757418)
[»] chr5 (3 HSPs)
chr5 (1-245)||(42911107-42911346)
chr5 (1-237)||(29106992-29107224)
chr5 (1-69)||(38997252-38997320)
[»] chr2 (1 HSPs)
chr2 (1-253)||(8539183-8539433)
[»] chr3 (1 HSPs)
chr3 (108-246)||(51302168-51302306)
[»] chr6 (2 HSPs)
chr6 (28-69)||(2100338-2100379)
chr6 (62-92)||(2100723-2100753)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 14174185 - 14173937
Alignment:
Q  1 aaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnn 100  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  14174185 aaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctcacacaca 14174086  T
Q  101 nnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccgg 200  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14174085 ca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagatgatacccacccgg 14173990  T
Q  201 tgtatttttcccacactctctggatttactcaacactctatttttcatctcac 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14173989 tgtatttttcccacactctctggatttactcaacactctatttttcctctcac 14173937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 14178939 - 14178691
Alignment:
Q  1 aaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnn 100  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  14178939 aaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctcacacaca 14178840  T
Q  101 nnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccgg 200  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14178839 ca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagatgatacccacccgg 14178744  T
Q  201 tgtatttttcccacactctctggatttactcaacactctatttttcatctcac 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14178743 tgtatttttcccacactctctggatttactcaacactctatttttcctctcac 14178691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 28606923 - 28607171
Alignment:
Q  1 aaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnn 100  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  28606923 aaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctcacacaca 28607022  T
Q  101 nnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccgg 200  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28607023 ca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagatgatacccacccgg 28607118  T
Q  201 tgtatttttcccacactctctggatttactcaacactctatttttcatctcac 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28607119 tgtatttttcccacactctctggatttactcaacactctatttttcctctcac 28607171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 28611685 - 28611933
Alignment:
Q  1 aaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnn 100  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  28611685 aaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctcacacaca 28611784  T
Q  101 nnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccgg 200  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28611785 ca----agagatacaatatagtgtttcccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagatgatacccacccgg 28611880  T
Q  201 tgtatttttcccacactctctggatttactcaacactctatttttcatctcac 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28611881 tgtatttttcccacactctctggatttactcaacactctatttttcctctcac 28611933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 44161832 - 44161586
Alignment:
Q  1 aaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnn 100  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||            
T  44161832 aaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaat--tctctccactctcttacacaca 44161735  T
Q  101 nnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccgg 200  Q
          ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  44161734 ca----agagatacaatatagtgtttcccgtaagacctacttctattctaatgctattattttatagcacctagaagttatagagatgatacccacccgg 44161639  T
Q  201 tgtatttttcccacactctctggatttactcaacactctatttttcatctcac 253  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  44161638 tgtatttttcccacactctctggatttactcaacactctattattcctctcac 44161586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 25 - 245
Target Start/End: Complemental strand, 11104692 - 11104477
Alignment:
Q  25 accacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgt 124  Q
    ||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||              ||||||||||||||||||    
T  11104692 accacgggacaaactccgaaaaatattccaccatatctaagaatattacaatattctctccactctcttacacacaa-----agagatacaatatagtgt 11104598  T
Q  125 ttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctgga 224  Q
    ||||||||||||| ||| |||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  11104597 ttcccgtgagacccactcctattcaaatgctattattttataacacctagaagttatagagatgatatccacccggtgtatttttcctacactctctgga 11104498  T
Q  225 tttactcaacactctattttt 245  Q
    |||||||||||||||||||||    
T  11104497 tttactcaacactctattttt 11104477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 5 - 191
Target Start/End: Original strand, 48826819 - 48827000
Alignment:
Q  5 cctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnnnnnn 104  Q
    |||||||||| |||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||                
T  48826819 cctctaataccgagggaaaaatcacgggacaa-ctccgaaaaatattccactatattaaagaatattacaatattctcttcgctctct----tacacaca 48826913  T
Q  105 nnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgata 191  Q
      |||||||||||||||||||||||||||||   ||| |||||  ||||||||||| ||||||||||||||||||||||||||||||    
T  48826914 caagagatacaatatagtgtttcccgtgagattcactcctatttgaatgctattattttatagcacctagaagttatagagatgata 48827000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 48708181 - 48708256
Alignment:
Q  9 taatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 84  Q
    ||||||| || |||| |||||| |||||||||| ||||||||| || ||||||||| |||||||||||||||||||    
T  48708181 taatactaagagaaaaaccacgtgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc 48708256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 24726306 - 24726381
Alignment:
Q  17 agggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 92  Q
    |||||||  ||||| ||||||||| ||||||||||||| |||||||||||| || | ||||||||||||| |||||    
T  24726306 agggaaaagccacgagacaaactctgaaaaatattccattatattaaagaacataataatattctctccattctct 24726381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 12930924 - 12930676
Alignment:
Q  1 aaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnn 100  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  12930924 aaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctcacacaca 12930825  T
Q  101 nnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccgg 200  Q
          |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12930824 ca----agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttatagagatgatacccacccgg 12930729  T
Q  201 tgtatttttcccacactctctggatttactcaacactctatttttcatctcac 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12930728 tgtatttttcccacactctctggatttactcaacactctatttttcctctcac 12930676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 12935670 - 12935422
Alignment:
Q  1 aaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnn 100  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  12935670 aaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctcacacaca 12935571  T
Q  101 nnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccgg 200  Q
          |||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12935570 ca----agagatacaatatagtgtttcccgtgagacctacttttactctaatgctattattttatagcacctagaagttatagagatgatacccacccgg 12935475  T
Q  201 tgtatttttcccacactctctggatttactcaacactctatttttcatctcac 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12935474 tgtatttttcccacactctctggatttactcaacactctatttttcctctcac 12935422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 26504996 - 26505055
Alignment:
Q  33 acaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctct 92  Q
    ||||||||| |||||||||| |||||| |||| |||||||||||||||| || |||||||    
T  26504996 acaaactccaaaaaatattcaactataataaaaaatattacaatattctttcaactctct 26505055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 34907387 - 34907139
Alignment:
Q  1 aaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnn 100  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  34907387 aaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctcacacaca 34907288  T
Q  101 nnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccgg 200  Q
          |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34907287 ca----agagatacaatatagtgtttcccgtgagacctacttttattctaatgctattattttatagcacctagaagttatagagatgatacccacccgg 34907192  T
Q  201 tgtatttttcccacactctctggatttactcaacactctatttttcatctcac 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34907191 tgtatttttcccacactctctggatttactcaacactctatttttcctctcac 34907139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 37040543 - 37040791
Alignment:
Q  1 aaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnn 100  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||            
T  37040543 aaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattttctccactctctcacacaca 37040642  T
Q  101 nnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccgg 200  Q
          |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  37040643 ca----agagatacaatatagtgttttccgtgagacctacttctattctaatgctattattttatagcacctagaagttatagagatgatacccacccga 37040738  T
Q  201 tgtatttttcccacactctctggatttactcaacactctatttttcatctcac 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37040739 tgtatttttcccacactctctggatttactcaacactctatttttcctctcac 37040791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 15290476 - 15290243
Alignment:
Q  1 aaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnn 100  Q
    |||||||||||||| |||| | | ||||||||||||||||| ||| || |||||||||||| ||||||||||||||||||||||||||||||            
T  15290476 aaaccctctaataccgaggtataaaccacgggacaaactccaaaagattttccactatatttaagaatattacaatattctctccactctcttacacaca 15290377  T
Q  101 nnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccgg 200  Q
          |||||||||||||||||||||| |||||||| ||| |||||| ||||||||||| | |  ||||||||||||||||||||||||||||||||||    
T  15290376 ca----agagatacaatatagtgtttcc-gtgagacccactcctattcgaatgctattatttca--gcacctagaagttatagagatgatacccacccgg 15290284  T
Q  201 tgtatttttcccacactctctggatttactcaacactctatt 242  Q
    ||||||||| ||||||| |||||||||| |||||||||||||    
T  15290283 tgtattttt-ccacactttctggatttagtcaacactctatt 15290243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 246
Target Start/End: Complemental strand, 12082227 - 12082022
Alignment:
Q  35 aaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnnnnnnnnagagatacaatatagtgtttcccgtgag 134  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||              |||||||||||||||||||||   ||||    
T  12082227 aaactccaaaaaatattccactatattaa-gaatattacaatattttctccactctcttacacggaaa----agagatacaatatagtgtttctaatgag 12082133  T
Q  135 acctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtatttttcccacactctctggatttactcaac 234  Q
    ||   || |||||| |||| |||||| ||||||| |||||||||||||||||| ||||| ||||| | |||||||||| |  | ||||||||||| ||||    
T  12082132 actcgctcctattcaaatgttattattttatagcgcctagaagttatagagataatacctacccgatatatttttccc-ctttttctggatttacccaac 12082034  T
Q  235 actctatttttc 246  Q
    |||||| |||||    
T  12082033 actctaattttc 12082022  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 12099247 - 12099060
Alignment:
Q  1 aaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnn 100  Q
    ||||||||||||   || ||||| |||| ||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||            
T  12099247 aaaccctctaatgacgaaggaaaaaccaagggacaaactccgaaaaaatttcaactatattaaagaatattacaatattctctccactctct----taca 12099152  T
Q  101 nnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatac 192  Q
          ||||| ||||||| |||||||  |||||||  ||| |||||| |||| |||||| ||||| |||||| ||||||||||||||||||    
T  12099151 cgcacaagagacacaatattgtgtttctagtgagactcactcctattcaaatgatattattttataacacctaaaagttatagagatgatac 12099060  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 2757370 - 2757418
Alignment:
Q  44 aaaatattccactatattaaagaatattacaatattctctccactctct 92  Q
    |||||||||||||||||| || |||||| || |||||||||||||||||    
T  2757370 aaaatattccactatatttaaaaatattgcactattctctccactctct 2757418  T

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Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 42911107 - 42911346
Alignment:
Q  1 aaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnn 100  Q
    |||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||            
T  42911107 aaaccctctaataccgagggaaaaaccacgggacaaactccgaaaa-tattccactatatttaagaatattacaatattctctccactctctcacacaca 42911205  T
Q  101 nnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccgg 200  Q
          | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |    
T  42911206 ca----aaagatacaatatagtgtttcccttgagacctacttctattctaatgctattattttatagcaccaagaagttatagagatgatacccacccag 42911301  T
Q  201 tgtatttttcccacactctctggatttactcaacactctattttt 245  Q
    ||||||||| |||||||||||||||||||||||||||||||||||    
T  42911302 tgtattttttccacactctctggatttactcaacactctattttt 42911346  T

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Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 29106992 - 29107224
Alignment:
Q  1 aaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnn 100  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  29106992 aaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctcttacacaca 29107091  T
Q  101 nnnnnnagagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgata-cccacccg 199  Q
          |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||| |||||||     
T  29107092 ca----agagatacaa-atagtgtttcccgtgagacctacttctattctaatgctattattttttagcacctagaagttataaagatgataccccaccca 29107186  T
Q  200 gtgtatttttcccacactctctggatttactcaacact 237  Q
     |||||||||||||||||||||||||||||||||||||    
T  29107187 atgtatttttcccacactctctggatttactcaacact 29107224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 38997252 - 38997320
Alignment:
Q  1 aaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaata 69  Q
    |||||||||||||  ||  |||| || |||||||||||||| ||||||| |||| ||||||||||||||    
T  38997252 aaaccctctaatatcgaacgaaaaactacgggacaaactccaaaaaataatccattatattaaagaata 38997320  T

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Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 8539433 - 8539183
Alignment:
Q  1 aaaccctctaatactgagggaaagaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctccactctctnnnnnnnn 100  Q
    |||||||||||||| |||||||| | ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||            
T  8539433 aaaccctctaataccgagggaaaaatcacgggacaaactccgaaagatattccactatatttaagaatattacaatattatctccactctcttacacaca 8539334  T
Q  101 nnnnnnagagatacaatat---agtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacc 197  Q
          |||||||||||||   ||||||||| |||||||| ||| |||||| | ||||||||| ||| |||||||| ||||||||||||||||||||| |    
T  8539333 ca----agagatacaatattatagtgtttcc-gtgagacccactcctattcgattgctattattttacagcacctaaaagttatagagatgatacccatc 8539239  T
Q  198 cggtgtatttttcccacactctctggatttactcaacactctatttttcatctcac 253  Q
    || |||||||||||||||||||||| ||||||| |||||| |||||||| ||||||    
T  8539238 cgatgtatttttcccacactctctgaatttactgaacactatatttttcctctcac 8539183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 108 - 246
Target Start/End: Complemental strand, 51302306 - 51302168
Alignment:
Q  108 gagatacaatatagtgtttcccgtgagacctacttctattctaatgctattatattatagcacctagaagttatagagatgatacccacccggtgtattt 207  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||    
T  51302306 gagatacaatatagtgtttcccgtgagacccactcctattcgaatgcaattgttttatagcacctagaagttatagagatgattcccacccggtgtattt 51302207  T
Q  208 ttcccacactctctggatttactcaacactctatttttc 246  Q
    |  ||||||||||||||||||||||| ||||||||||||    
T  51302206 tatccacactctctggatttactcaatactctatttttc 51302168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 2100338 - 2100379
Alignment:
Q  28 acgggacaaactccgaaaaatattccactatattaaagaata 69  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  2100338 acggggcaaactccgaaaaatattccactatattaaagaata 2100379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 92
Target Start/End: Original strand, 2100723 - 2100753
Alignment:
Q  62 aaagaatattacaatattctctccactctct 92  Q
    |||||||||||||||||||||||||||||||    
T  2100723 aaagaatattacaatattctctccactctct 2100753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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