View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2529_low_5 (Length: 412)
Name: NF2529_low_5
Description: NF2529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2529_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 10873335 - 10872950
Alignment:
| Q |
1 |
ttttgattccctctctcacactttcaacaagtaagtaattttcaattttgaactttcttctgtttcactataaattttgttgaaattactcatttggata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10873335 |
ttttgattccctctctcacactttcaacaagtaagtaattttcaattttgaactttcttctgtttcactataaattttgttgaaattactcatttggata |
10873236 |
T |
|
| Q |
101 |
agtgattgattttctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatacactaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10873235 |
agtgattgattttctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatacactaggt |
10873136 |
T |
|
| Q |
201 |
tcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10873135 |
tcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgt |
10873036 |
T |
|
| Q |
301 |
tattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaattggattgaagggagagggaaatcagtggtctgtg |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
10873035 |
tattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaactggattgaagggagagggaaatcagtggtgtgtg |
10872950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 10878406 - 10878021
Alignment:
| Q |
1 |
ttttgattccctctctcacactttcaacaagtaagtaattttcaattttgaactttcttctgtttcactataaattttgttgaaattactcatttggata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10878406 |
ttttgattccctctctcacactttcaacaagtaagtaattttcaattttgaactttcttctgtttcactataaattttgttgaaattactcatttggata |
10878307 |
T |
|
| Q |
101 |
agtgattgattttctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatacactaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10878306 |
agtgattgattttctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatacactaggt |
10878207 |
T |
|
| Q |
201 |
tcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10878206 |
tcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgt |
10878107 |
T |
|
| Q |
301 |
tattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaattggattgaagggagagggaaatcagtggtctgtg |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
10878106 |
tattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaactggattgaagggagagggaaatcagtggtgtgtg |
10878021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 10883477 - 10883092
Alignment:
| Q |
1 |
ttttgattccctctctcacactttcaacaagtaagtaattttcaattttgaactttcttctgtttcactataaattttgttgaaattactcatttggata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10883477 |
ttttgattccctctctcacactttcaacaagtaagtaattttcaattttgaactttcttctgtttcactataaattttgttgaaattactcatttggata |
10883378 |
T |
|
| Q |
101 |
agtgattgattttctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatacactaggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10883377 |
agtgattgattttctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatacactaggt |
10883278 |
T |
|
| Q |
201 |
tcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10883277 |
tcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgt |
10883178 |
T |
|
| Q |
301 |
tattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaattggattgaagggagagggaaatcagtggtctgtg |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
10883177 |
tattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaactggattgaagggagagggaaatcagtggtgtgtg |
10883092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 10866970 - 10867362
Alignment:
| Q |
1 |
ttttgattccctctctcacactttcaacaagtaagtaattttcaattttgaactttcttctgtttcactataaatttt----gttgaaattact---cat |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |
|
|
| T |
10866970 |
ttttgattccctctctcacactttcaacaagtaagtaattttcaattttgaactttcttctgtttcactttaaattttatttgttgaaattactagtcat |
10867069 |
T |
|
| Q |
94 |
ttggataagtgattgattttctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatac |
193 |
Q |
| |
|
||| |||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
10867070 |
ttgaataattgtttgattttctctgcgatatttatttaggtcaagtagatttgcaagattacagagtattaaagctactatggcaggaaagaatttgtac |
10867169 |
T |
|
| Q |
194 |
actaggttcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgata |
293 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10867170 |
actagattcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgata |
10867269 |
T |
|
| Q |
294 |
tggatgttattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaattggattgaagggagagggaaatcagtggtctgtg |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10867270 |
tggatgttattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaattggattgaagggagagggaaatcagtggtgtgtg |
10867362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 10887395 - 10887007
Alignment:
| Q |
1 |
ttttgattccctctctcacactttcaacaagtaagtaattttcaattttgaactttcttctgtttcactataaatttt----gttgaaattactc---at |
93 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||| |||||||||||| || |
|
|
| T |
10887395 |
ttttgattccctctctcacactttcaacaagtaa----ttttcaattttgaactttcttcggtttcactttaaattttatttgttgaaattactacttat |
10887300 |
T |
|
| Q |
94 |
ttggataagtgattgattttctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatac |
193 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10887299 |
ttggataactgattgattttctctgcaatatttatttaggtcaagtagatttgcaagattacagagtattaaagctactatggcaggaaagaatttatac |
10887200 |
T |
|
| Q |
194 |
actaggttcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgata |
293 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10887199 |
actagattcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgata |
10887100 |
T |
|
| Q |
294 |
tggatgttattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaattggattgaagggagagggaaatcagtggtctgtg |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10887099 |
tggatgttattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaattggattgaagggagagggaaatcagtggtgtgtg |
10887007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 75 - 386
Target Start/End: Original strand, 39676594 - 39676905
Alignment:
| Q |
75 |
ttttgttgaaattactcatttggataagtgattgattttctctgcgatatttatttaggtcaagtagatttgcaagactacagagtattaaagctactat |
174 |
Q |
| |
|
|||||||||||| |||||||||||||| | ||||||||| | | ||||| |||||||||||||||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
39676594 |
ttttgttgaaatgactcatttggataattaattgattttgttttggatatatatttaggtcaagtagatttgcaagattacaaaatattaaagctactat |
39676693 |
T |
|
| Q |
175 |
ggctggaaagaatttatacactaggttcacttgttcaacgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttctt |
274 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39676694 |
agcaggaaagaatttatacactagattcacttgttcaaccggtgatgcaatggggatgaacatggtatcaaaaggtgtacaaaacgtacttgattttctt |
39676793 |
T |
|
| Q |
275 |
caaaccgattttcccgatatggatgttattggtatatctggaaatttttgttcggacaagaaagctgcggcagtgaattggattgaagggagagggaaat |
374 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39676794 |
caaactgattttcctgatatggatgttattggtatatctggaaatttttgttcggacaagaaagctgcggcggtgaattggattgaagggagagggaaat |
39676893 |
T |
|
| Q |
375 |
cagtggtctgtg |
386 |
Q |
| |
|
||||||| |||| |
|
|
| T |
39676894 |
cagtggtttgtg |
39676905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 125 - 312
Target Start/End: Original strand, 10046746 - 10046933
Alignment:
| Q |
125 |
ttatttaggtcaagtagatttgcaagactacagagtattaaagctactatggctggaaagaatttatacactaggttcacttgttcaacgggtgatgcaa |
224 |
Q |
| |
|
||||| ||||||||||||||||| ||| |||||| ||||||||| || ||||| |||||||||||||||| ||| || || |||||||| |||||||||| |
|
|
| T |
10046746 |
ttattcaggtcaagtagatttgcgagattacagaatattaaagcaacaatggcaggaaagaatttatacattagatttacatgttcaaccggtgatgcaa |
10046845 |
T |
|
| Q |
225 |
tggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattggtatatc |
312 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
10046846 |
tgggaatgaacatggtatcaaaaggtgtacaaaacgtacttgattttcttcaaagcgattttcctgatatggatgttattggtatatc |
10046933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 314 - 386
Target Start/End: Original strand, 10047038 - 10047110
Alignment:
| Q |
314 |
ggaaatttttgttcggacaagaaagctgcggcagtgaattggattgaagggagagggaaatcagtggtctgtg |
386 |
Q |
| |
|
||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10047038 |
ggaaatttttgttcggataagaaagccgcggcggtgaattggattgaagggagagggaaatcagtggtgtgtg |
10047110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 326
Target Start/End: Original strand, 37949453 - 37949567
Alignment:
| Q |
212 |
acgggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattggtatat |
311 |
Q |
| |
|
||||||||||| ||||||||||||||||| || ||||| || || ||||| |||||||| |||| || ||||| || || |||||||||||||| |||| |
|
|
| T |
37949453 |
acgggtgatgccatggggatgaacatggtctccaaaggggtgcagaacgttcttgatttccttcgaaatgatttccctgacatggatgttattggcatat |
37949552 |
T |
|
| Q |
312 |
ctggaaatttttgtt |
326 |
Q |
| |
|
| || ||||| |||| |
|
|
| T |
37949553 |
caggtaatttctgtt |
37949567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 10046590 - 10046623
Alignment:
| Q |
1 |
ttttgattccctctctcacactttcaacaagtaa |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
10046590 |
ttttgattccctctctcacactttcaacaagtaa |
10046623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 39676534 - 39676585
Alignment:
| Q |
1 |
ttttgattccctctctcacactttcaacaagtaagtaattttcaattttgaa |
52 |
Q |
| |
|
|||||||||| ||||||| || ||||||||||||||| |||| ||||||||| |
|
|
| T |
39676534 |
ttttgattccatctctcatacattcaacaagtaagtatttttgaattttgaa |
39676585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 378
Target Start/End: Original strand, 37950091 - 37950155
Alignment:
| Q |
314 |
ggaaatttttgttcggacaagaaagctgcggcagtgaattggattgaagggagagggaaatcagt |
378 |
Q |
| |
|
||||||| ||||||||| |||||| |||| ||||| ||||||||||| || | ||||||||||| |
|
|
| T |
37950091 |
ggaaattattgttcggataagaaacctgccgcagttaattggattgagggacgcgggaaatcagt |
37950155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 306
Target Start/End: Complemental strand, 30708537 - 30708446
Alignment:
| Q |
215 |
ggtgatgcaatggggatgaacatggtatcgaaaggtgtacaaaacgtacttgattttcttcaaaccgattttcccgatatggatgttattgg |
306 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||| ||||| || |||||||||||||| | || ||||| || |||||||| ||||| |
|
|
| T |
30708537 |
ggtgatgccatggggatgaacatggtgtcaaaaggtgttcaaaatgtccttgattttcttcagagtgactttcctgacatggatgtcattgg |
30708446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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