View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2529_low_8 (Length: 336)
Name: NF2529_low_8
Description: NF2529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2529_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 31 - 294
Target Start/End: Complemental strand, 33116968 - 33116705
Alignment:
| Q |
31 |
ccaaacaacatgaatgtccatgcaactccaatagcttgtgtgagagataaaaaggattgagaaacaataaggtttgagatccaaacacttgttgaagcca |
130 |
Q |
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| T |
33116968 |
ccaaacaacatgaatgtccatgcaactccaatagcttgtgtgagagataaaaaggattgagaaacaataaggtttgagatccaaacacttgttgaagcca |
33116869 |
T |
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| Q |
131 |
ttcctccacagactcctctataccttaaagggtaaatctcagagtttatgacccatggaacagtccccattccaggtgaaaagaacagtatatagagagc |
230 |
Q |
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| T |
33116868 |
ttcctccacagactcctctataccttaaagggtaaatctcagagtttatgacccatggaacagtccccattccaggtgaaaagaacagtatatagagagc |
33116769 |
T |
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| Q |
231 |
caatccaatcagtgcaagccaacccaatttgctaggacatccttgtgtataccatgatctgtgt |
294 |
Q |
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| T |
33116768 |
caatccaatcagtgcaagccaacccaatttgctaggacatccttgtgtataccatgatctgtgt |
33116705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 75 - 215
Target Start/End: Complemental strand, 33120136 - 33119996
Alignment:
| Q |
75 |
agataaaaaggattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagag |
174 |
Q |
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| T |
33120136 |
agataaaaaggattgagaaacaatgaggttagagacccacactgttgttgatgctattcctccacatattcctctataccttaaagggtgtatttcagag |
33120037 |
T |
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| Q |
175 |
tttatgacccatggaacagtccccattccaggtgaaaagaa |
215 |
Q |
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| T |
33120036 |
ttgataacccatggaaccgttcccattcctggtgaaaagaa |
33119996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 215
Target Start/End: Original strand, 21491884 - 21492014
Alignment:
| Q |
85 |
gattgagaaacaataaggtttgagatccaaacacttgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagagtttatgaccc |
184 |
Q |
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||||||||||||| |||||| || | ||| || ||||||| || ||||||||||| | |||||||||||| || || || || |||||||| | |||| |
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| T |
21491884 |
gattgagaaacaacaaggttggaaacccacactgttgttgatgctattcctccacatattcctctatacctcaatggatagatttcagagttaacaaccc |
21491983 |
T |
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| Q |
185 |
atggaacagtccccattccaggtgaaaagaa |
215 |
Q |
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| T |
21491984 |
atggaactgttcccattccaggcgagaagaa |
21492014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 21558479 - 21558574
Alignment:
| Q |
120 |
tgttgaagccattcctccacagactcctctataccttaaagggtaaatctcagagtttatgacccatggaacagtccccattccaggtgaaaagaa |
215 |
Q |
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| T |
21558479 |
tgttgacgcgattcctccacatattcctctgtatcttaatggatatatttcagagtttacaacccatggaactgttcccattcctggtgagaagaa |
21558574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 34899975 - 34899946
Alignment:
| Q |
7 |
atctcaacttgaaagttgaaactaccaaac |
36 |
Q |
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| T |
34899975 |
atctcaacttgaaagttgaaactaccaaac |
34899946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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