View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2530_low_3 (Length: 617)
Name: NF2530_low_3
Description: NF2530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2530_low_3 |
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| [»] scaffold0135 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 2e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 212 - 415
Target Start/End: Complemental strand, 9200430 - 9200228
Alignment:
| Q |
212 |
taagtaagatctggattttgatttataaaaattcatgctactatatattattttgaacatttaatttgatgtttaaattataaacaggtaacagcaaaga |
311 |
Q |
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| T |
9200430 |
taagtaatatatggattttgttttataaaaactcatgctactgtatatcattttgaacatttgatttgatgtttaaagtataaacatgtaa-agcaaaga |
9200332 |
T |
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| Q |
312 |
tacattctatgtttacaagggagtttgggtatcaaattgctacgtatgtaaacttgtgtgatccaaacagaaacgaacatgaagttatgatagagaaaag |
411 |
Q |
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| T |
9200331 |
taccttctatgtttacaagggagtttgggtatcaaatttctacatatgtaacattgagtgatccaaacgaaaacgaacatgaagttatgatagagaagag |
9200232 |
T |
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| Q |
412 |
gtat |
415 |
Q |
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|||| |
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| T |
9200231 |
gtat |
9200228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 320 - 415
Target Start/End: Complemental strand, 9202085 - 9201990
Alignment:
| Q |
320 |
atgtttacaagggagtttgggtatcaaattgctacgtatgtaaacttgtgtgatccaaacagaaacgaacatgaagttatgatagagaaaaggtat |
415 |
Q |
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| T |
9202085 |
atgtttacaagggagtttgggtattaaatttctacatatgtaacattgagtgatccaaacggaaacgaacatgaagttatgatagagaagaggtat |
9201990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 3e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 41653192 - 41653311
Alignment:
| Q |
19 |
gattggaggatatgtttaagaagtttgggaatattttgtcaagtaaagttgtaatgtctgaggatgggaagagtaaaggatatggctttgttcaatttga |
118 |
Q |
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| T |
41653192 |
gattagaggatatgtttaagaagtttgggaatattttgtcaagtaaagttgtaatgtctgaggatgggaagagtaaaggatatggctttgttcaatttga |
41653291 |
T |
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| Q |
119 |
tacagaggaatctgcaaatg |
138 |
Q |
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| T |
41653292 |
aacagaggaatctgcaaatg |
41653311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0135
Description:
Target: scaffold0135; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 320 - 415
Target Start/End: Complemental strand, 167 - 72
Alignment:
| Q |
320 |
atgtttacaagggagtttgggtatcaaattgctacgtatgtaaacttgtgtgatccaaacagaaacgaacatgaagttatgatagagaaaaggtat |
415 |
Q |
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| T |
167 |
atgtttacaagggagtttgggtattaaatttctacatatgtaacattgagtgatccaaacggaaacgaacatgaagttatgatagagaagaggtat |
72 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 491 - 567
Target Start/End: Complemental strand, 12073037 - 12072961
Alignment:
| Q |
491 |
attttgtatgcaaaacctgccctttttctcatcacagtaaaaaataagcataagaaagtcattcacaatcctaagca |
567 |
Q |
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| T |
12073037 |
attttgtatgcaagacctggtctttttcttatcacagtcaagaataagcatatgaaagacatttgcaatcctaagca |
12072961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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