View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2530_low_5 (Length: 508)

Name: NF2530_low_5
Description: NF2530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2530_low_5
NF2530_low_5
[»] chr2 (21 HSPs)
chr2 (19-370)||(38581681-38582032)
chr2 (20-235)||(38617467-38617682)
chr2 (19-334)||(38563512-38563833)
chr2 (19-276)||(38606375-38606638)
chr2 (370-494)||(38581529-38581653)
chr2 (383-449)||(30737042-30737108)
chr2 (392-458)||(34107344-34107410)
chr2 (392-448)||(17896888-17896944)
chr2 (396-445)||(33124337-33124386)
chr2 (375-448)||(44487736-44487809)
chr2 (396-448)||(25463235-25463287)
chr2 (392-448)||(35352373-35352429)
chr2 (396-450)||(26975266-26975320)
chr2 (392-457)||(39334841-39334906)
chr2 (420-448)||(5613056-5613084)
chr2 (393-449)||(6282306-6282362)
chr2 (419-447)||(10915522-10915550)
chr2 (396-448)||(23664043-23664095)
chr2 (375-446)||(34018043-34018112)
chr2 (392-428)||(34644474-34644510)
chr2 (420-448)||(36182744-36182772)
[»] chr4 (23 HSPs)
chr4 (391-457)||(30203322-30203389)
chr4 (391-448)||(21664147-21664204)
chr4 (391-448)||(21672911-21672968)
chr4 (176-228)||(30195414-30195466)
chr4 (392-448)||(49039414-49039470)
chr4 (392-447)||(20610809-20610864)
chr4 (392-448)||(33359887-33359943)
chr4 (393-457)||(54854139-54854203)
chr4 (392-435)||(18740898-18740941)
chr4 (393-432)||(27921967-27922006)
chr4 (393-428)||(39449470-39449505)
chr4 (394-447)||(8998347-8998400)
chr4 (392-446)||(41492470-41492524)
chr4 (392-448)||(21476052-21476106)
chr4 (393-446)||(23226676-23226729)
chr4 (396-441)||(33524220-33524265)
chr4 (392-448)||(36257764-36257818)
chr4 (375-436)||(47416521-47416582)
chr4 (420-448)||(8965196-8965224)
chr4 (392-432)||(21023337-21023377)
chr4 (420-448)||(30057324-30057352)
chr4 (420-448)||(36132331-36132359)
chr4 (393-448)||(49280640-49280693)
[»] chr7 (20 HSPs)
chr7 (371-441)||(41000809-41000879)
chr7 (420-456)||(3766913-3766949)
chr7 (392-448)||(10958103-10958159)
chr7 (392-448)||(44409270-44409326)
chr7 (392-457)||(1649222-1649287)
chr7 (375-440)||(32309125-32309190)
chr7 (375-456)||(32814880-32814961)
chr7 (407-456)||(48053235-48053284)
chr7 (392-448)||(5773201-5773257)
chr7 (392-457)||(29658234-29658297)
chr7 (375-457)||(36315934-36316016)
chr7 (393-446)||(3481140-3481193)
chr7 (392-448)||(11808108-11808165)
chr7 (375-448)||(25711101-25711173)
chr7 (392-457)||(26734232-26734296)
chr7 (391-448)||(28555820-28555877)
chr7 (391-448)||(42976569-42976626)
chr7 (389-441)||(7162644-7162696)
chr7 (392-448)||(10020438-10020494)
chr7 (418-450)||(17900848-17900880)
[»] chr8 (18 HSPs)
chr8 (375-448)||(220331-220404)
chr8 (375-448)||(689486-689559)
chr8 (375-448)||(733954-734027)
chr8 (375-448)||(857850-857923)
chr8 (375-435)||(14011020-14011080)
chr8 (392-452)||(16808325-16808385)
chr8 (420-457)||(43085154-43085191)
chr8 (391-454)||(29653123-29653187)
chr8 (393-448)||(39208838-39208893)
chr8 (391-453)||(22438548-22438610)
chr8 (420-457)||(11875988-11876025)
chr8 (420-457)||(11890995-11891032)
chr8 (388-425)||(26773694-26773731)
chr8 (391-431)||(4604339-4604379)
chr8 (392-448)||(18123931-18123987)
chr8 (420-456)||(29514728-29514764)
chr8 (420-448)||(34413164-34413192)
chr8 (420-448)||(35818161-35818189)
[»] chr5 (14 HSPs)
chr5 (392-457)||(3535896-3535961)
chr5 (391-436)||(17137848-17137893)
chr5 (393-446)||(18535985-18536038)
chr5 (375-448)||(34325318-34325391)
chr5 (392-448)||(8934851-8934907)
chr5 (392-440)||(37986844-37986892)
chr5 (392-447)||(36116850-36116904)
chr5 (392-431)||(39684308-39684347)
chr5 (392-441)||(20186934-20186983)
chr5 (391-448)||(27006409-27006466)
chr5 (392-452)||(13862194-13862254)
chr5 (420-452)||(22569181-22569213)
chr5 (392-436)||(22687862-22687906)
chr5 (392-448)||(28537205-28537261)
[»] scaffold0002 (1 HSPs)
scaffold0002 (392-448)||(440469-440525)
[»] chr1 (26 HSPs)
chr1 (392-448)||(38028607-38028663)
chr1 (392-453)||(195114-195175)
chr1 (392-453)||(2643779-2643840)
chr1 (419-460)||(3269712-3269753)
chr1 (392-457)||(9768769-9768834)
chr1 (392-457)||(9931157-9931222)
chr1 (392-448)||(3341705-3341761)
chr1 (392-448)||(9769549-9769605)
chr1 (392-448)||(12553264-12553320)
chr1 (392-448)||(19866545-19866601)
chr1 (396-448)||(23758221-23758273)
chr1 (420-456)||(33033228-33033264)
chr1 (392-448)||(48260158-48260214)
chr1 (396-448)||(50147598-50147650)
chr1 (393-448)||(1721211-1721266)
chr1 (392-447)||(2902997-2903052)
chr1 (388-427)||(3261924-3261963)
chr1 (391-448)||(4069581-4069636)
chr1 (392-430)||(4511512-4511550)
chr1 (395-448)||(7906294-7906348)
chr1 (393-455)||(9163354-9163415)
chr1 (392-449)||(13941389-13941446)
chr1 (392-441)||(23973458-23973507)
chr1 (392-436)||(23750220-23750264)
chr1 (392-436)||(41677130-41677174)
chr1 (420-460)||(48497170-48497210)
[»] chr3 (19 HSPs)
chr3 (392-453)||(28951936-28951997)
chr3 (392-447)||(33533273-33533328)
chr3 (391-448)||(43911675-43911732)
chr3 (420-457)||(44764501-44764538)
chr3 (396-448)||(4009987-4010039)
chr3 (393-457)||(6054185-6054249)
chr3 (392-440)||(40160805-40160853)
chr3 (420-452)||(46798680-46798712)
chr3 (375-458)||(50724420-50724501)
chr3 (418-448)||(3993676-3993706)
chr3 (375-448)||(50788357-50788428)
chr3 (391-440)||(8724841-8724889)
chr3 (391-440)||(9076728-9076776)
chr3 (392-456)||(28206500-28206562)
chr3 (420-448)||(16141322-16141350)
chr3 (420-448)||(32429849-32429877)
chr3 (392-452)||(36842232-36842292)
chr3 (396-448)||(40956656-40956708)
chr3 (392-440)||(47497148-47497196)
[»] chr6 (20 HSPs)
chr6 (419-456)||(15963875-15963912)
chr6 (393-441)||(4844214-4844262)
chr6 (392-448)||(17305587-17305642)
chr6 (393-448)||(3243887-3243942)
chr6 (392-446)||(3037560-3037614)
chr6 (419-453)||(25045841-25045875)
chr6 (419-460)||(978064-978105)
chr6 (420-457)||(13732913-13732950)
chr6 (396-448)||(16119352-16119405)
chr6 (392-457)||(26669619-26669684)
chr6 (420-448)||(9888465-9888493)
chr6 (396-448)||(12291244-12291296)
chr6 (396-448)||(14948988-14949040)
chr6 (420-448)||(16913841-16913869)
chr6 (392-448)||(17347324-17347380)
chr6 (392-448)||(20149948-20150004)
chr6 (392-448)||(22182828-22182884)
chr6 (420-448)||(28222964-28222992)
chr6 (392-428)||(29204858-29204894)
chr6 (392-448)||(30668153-30668209)
[»] scaffold0366 (1 HSPs)
scaffold0366 (420-456)||(792-828)
[»] scaffold0118 (1 HSPs)
scaffold0118 (392-443)||(37302-37353)
[»] scaffold0119 (1 HSPs)
scaffold0119 (392-457)||(1109-1174)
[»] scaffold0038 (1 HSPs)
scaffold0038 (420-448)||(23462-23490)


Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 370
Target Start/End: Complemental strand, 38582032 - 38581681
Alignment:
Q  19 catcaaccccacatgttacaatcacttgtagagtgggtcccatttcatgaatttctattttcggaaactttattatgcttccttttgctccataatcacc 118  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||    
T  38582032 catcaaccccacatgttacaatcacttgtagagtggatcccatttcatgaatttctatttttggcaactttattatgcttccttttgctccataaccacc 38581933  T
Q  119 acgtggtctcttcttgtttcccattaaactttctttcttctcctttgcaccctttagatttgtctctaggctctttatgtagtttatagcctcatctact 218  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38581932 acgtgatctcttcttgtttcccattaaactttctttcttctcctttgcaccctttagatttgtctctaggctctttatgtagtttatagcctcatctact 38581833  T
Q  219 tgatcaggtaatggtaacgctaattcctgcattacattagaaataacaccaaattaatgtgatatataatgtcggtccaagaagaggtgacaatgtcact 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38581832 tgatcaggtaatggtaacgctaattcctgcattacattagaaataacaccaaattaatgtgatatataatgtcggtccaagaagaggtgacaatgtcact 38581733  T
Q  319 taattagctaataataggaagatggtttcctcgtgagcataactcagttggt 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38581732 taattagctaataataggaagatggtttcctcgtgagcataactcagttggt 38581681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 38617467 - 38617682
Alignment:
Q  20 atcaaccccacatgttacaatcacttgtagagtgggtcccatttcatgaatttctattttcggaaactttattatgcttccttttgctccataatcacca 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||    
T  38617467 atcaaccccacatgttacaatcacttgtagagtgggtcccatttcatgaatttctatttttggcaactttattatgcttccttttgctccataaccacca 38617566  T
Q  120 cgtggtctcttcttgtttcccattaaactttctttcttctcctttgcaccctttagatttgtctctaggctctttatgtagtttatagcctcatctactt 219  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||   | ||| |||||||||||||||||||||||||||||||||||| || ||||    
T  38617567 cgtgatctcttcttgtttcccattaaactttcttttttctcctttgccaacattatatttgtctctaggctctttatgtagtttatagcctcgtcgactt 38617666  T
Q  220 gatcaggtaatggtaa 235  Q
    ||||||||||||||||    
T  38617667 gatcaggtaatggtaa 38617682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 38563833 - 38563512
Alignment:
Q  19 catcaaccccacatgttacaatcacttgtagagtgggtcccatttcatgaatttctattttcggaaactttattatgcttccttttgctccataat---- 114  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||| |||   ||||||||| |||||||||         
T  38563833 catcaaccccacatgttacaatcacttgtagagtgggtcctatttcatgaatctctatttttggcaactctat---gcttcctttcgctccataagaact 38563737  T
Q  115 --------caccacgtggtctcttcttgtttcccattaaactttctttcttctcctttgcaccctttagatttgtctctaggctctttatgtagtttata 206  Q
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||   ||||| |||| |||||||||||||||| |||||||||    
T  38563736 cgaccagccaccacgtgatctcttcttgtttcccattaaactttctttcttctcctttgccaactttatatttatctctaggctctttatatagtttata 38563637  T
Q  207 gcctcatctacttgatcaggtaatggtaacgctaattcctgcattacattagaaataacaccaaatta--atgtgatatataatgtcggtccaagaagag 304  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||| || | ||||||||||||||||  ||||| ||| | ||||||||||   |||||    
T  38563636 gcctcatctacttgatcaggtaacggtaacgctaattcctgtattaaatga-aaataacaccaaattaatatgtgttat-tcatgtcggtcc---aagag 38563542  T
Q  305 gtgacaatgtcacttaattagctaataata 334  Q
    |||| | |||||||||||||| ||||||||    
T  38563541 gtgatagtgtcacttaattagttaataata 38563512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 38606638 - 38606375
Alignment:
Q  19 catcaaccccacatgttacaatcacttgtagagtgggtcccatttcatgaatttctattttcggaaactttattatgcttccttttgctccataa----- 113  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||| || |||||||| || |||||||| ||   ||||||||| ||| ||         
T  38606638 catcaaccccacatgttacaattatttgtagagtgggtcccatttcatggatctctatttttggcaactttatgat---tccttttgccccagaagaact 38606542  T
Q  114 -------tcaccacgtggtctcttcttgtttcccattaaactttctttcttctcctttgcaccctttagatttgtctctaggctctttatgtagtttata 206  Q
           |||||||||| ||||||   ||||||||||||||||||||| |||||||||||   ||||| |||||||||||| ||||||||||||||||||    
T  38606541 tgagcagtcaccacgtgatctctt---gtttcccattaaactttcttttttctcctttgccaactttatatttgtctctagcctctttatgtagtttata 38606445  T
Q  207 gcctcatctacttgatcaggtaatggtaacgctaattcctgcattacattagaaataacaccaaattaat 276  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||    
T  38606444 gcctcatctacttgatcaggtaatggtaatgctaattcctgcattaaattaaaaataacaccaaattaat 38606375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 370 - 494
Target Start/End: Complemental strand, 38581653 - 38581529
Alignment:
Q  370 tgagattcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaataagaagatgag 469  Q
    ||||||||||| ||||| ||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38581653 tgagattcgaacctcggacatcccacttattcatcttaaaaaaggtgtattctaaccactaggctacttgaccaaaaaataaataaaataagaagatgat 38581554  T
Q  470 tttcttatgtctatgttagtataat 494  Q
    |||||||||||||||||||||||||    
T  38581553 tttcttatgtctatgttagtataat 38581529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 383 - 449
Target Start/End: Original strand, 30737042 - 30737108
Alignment:
Q  383 tcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaat 449  Q
    |||| ||| ||||||||||||||||||||||||| ||||||  |||||||||||||||  |||||||    
T  30737042 tcggacatcccacttattcaccttaaaaaatgtgaattctagtcactaggctacttgaaaaaaaaat 30737108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 392 - 458
Target Start/End: Original strand, 34107344 - 34107410
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaat 458  Q
    ||||||||||||||| ||||||||| |||||| ||||||| ||||||||| |||||| ||| |||||    
T  34107344 ccacttattcaccttgaaaaatgtgaattctagccactagactacttgacaaaaaaaaaaaaaaaat 34107410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 17896888 - 17896944
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||||||||||||||| |||||||||||||  |||||| || ||||||    
T  17896888 ccacttattcaccttaaaaaatgtgaattctaaccactaaactacttaacaaaaaaa 17896944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 445
Target Start/End: Complemental strand, 33124386 - 33124337
Alignment:
Q  396 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaa 445  Q
    ||||||||||||||||| ||| |||||||||||||  |||||||||||||    
T  33124386 ttattcaccttaaaaaaggtgaattctaaccactatactacttgaccaaa 33124337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 44487809 - 44487736
Alignment:
Q  375 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||| | ||| ||| ||||||||||||||||||||| ||| |||||||||||||  |||| |||| ||||||    
T  44487809 ttcgaaccccggacatcccacttattcaccttaaaaaaggtgaattctaaccactaacctacctgacaaaaaaa 44487736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 448
Target Start/End: Complemental strand, 25463287 - 25463235
Alignment:
Q  396 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||| |||||  || |||||||||||||||||||||||| ||||||    
T  25463287 ttattcaccttgaaaaaaatgaattctaaccactaggctacttgacaaaaaaa 25463235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 448
Target Start/End: Complemental strand, 35352429 - 35352373
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||||| ||||||||| ||||||  |||||| ||||||||| ||||||    
T  35352429 ccacttattcaccttgaaaaatgtgaattctagtcactagactacttgacaaaaaaa 35352373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 450
Target Start/End: Complemental strand, 26975320 - 26975266
Alignment:
Q  396 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaata 450  Q
    |||||||| |||||||| ||  ||||||||||||| |||||||||| ||||||||    
T  26975320 ttattcactttaaaaaaggttaattctaaccactacgctacttgacaaaaaaata 26975266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 457
Target Start/End: Complemental strand, 39334906 - 39334841
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 457  Q
    |||||||||||| || ||||| ||| |||||| ||||||| ||||||||| |||||| ||| ||||    
T  39334906 ccacttattcactttgaaaaaggtgaattctagccactagactacttgacaaaaaaaaaaaaaaaa 39334841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 448
Target Start/End: Original strand, 5613056 - 5613084
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||||||||||||||||    
T  5613056 tctaaccactaggctacttgaccaaaaaa 5613084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 449
Target Start/End: Original strand, 6282306 - 6282362
Alignment:
Q  393 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaat 449  Q
    ||||||||||| || ||||||||| |||||||||||||   |||||||| |||||||    
T  6282306 cacttattcactttgaaaaatgtgaattctaaccactaaattacttgacaaaaaaat 6282362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 447
Target Start/End: Complemental strand, 10915550 - 10915522
Alignment:
Q  419 ttctaaccactaggctacttgaccaaaaa 447  Q
    |||||||||||||||||||||||||||||    
T  10915550 ttctaaccactaggctacttgaccaaaaa 10915522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 448
Target Start/End: Original strand, 23664043 - 23664095
Alignment:
Q  396 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||| ||||| ||| ||||||| |||||| ||||||||| ||||||    
T  23664043 ttattcaccttgaaaaaagtgaattctaatcactagactacttgacaaaaaaa 23664095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 446
Target Start/End: Complemental strand, 34018112 - 34018043
Alignment:
Q  375 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaa 446  Q
    |||||| ||||| ||  |||||||||||||||| ||   ||| ||||||||||||||||||| |||||||||    
T  34018112 ttcgaacctcggacaccccacttattcaccttataag--gtgaattctaaccactaggctacctgaccaaaa 34018043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 428
Target Start/End: Complemental strand, 34644510 - 34644474
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccac 428  Q
    |||||||||||||||||||| |||| |||||||||||    
T  34644510 ccacttattcaccttaaaaattgtgaattctaaccac 34644474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 448
Target Start/End: Original strand, 36182744 - 36182772
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||||||||||||||||    
T  36182744 tctaaccactaggctacttgaccaaaaaa 36182772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 391 - 457
Target Start/End: Original strand, 30203322 - 30203389
Alignment:
Q  391 tccacttattcacctt-aaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 457  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||| | ||||||||    
T  30203322 tccacttattcatcttgaaaaaatgtgtattctaaccactaggctacttgacaaaaataaaaataaaa 30203389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 448
Target Start/End: Original strand, 21664147 - 21664204
Alignment:
Q  391 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||| ||| | ||| ||| |||||||||||||||||||||||||||||||    
T  21664147 tccacttattcatcttgagaaaggtgaattctaaccactaggctacttgaccaaaaaa 21664204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 448
Target Start/End: Original strand, 21672911 - 21672968
Alignment:
Q  391 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||| ||| | ||| ||| |||||||||||||||||||||||||||||||    
T  21672911 tccacttattcatcttgagaaaggtgaattctaaccactaggctacttgaccaaaaaa 21672968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 30195466 - 30195414
Alignment:
Q  176 atttgtctctaggctctttatgtagtttatagcctcatctacttgatcaggta 228  Q
    ||||| |||||  ||||||||||||||||||||||||||||||||||| ||||    
T  30195466 atttgcctctaaactctttatgtagtttatagcctcatctacttgatccggta 30195414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 448
Target Start/End: Complemental strand, 49039470 - 49039414
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||||| ||||| ||| |||||| |||||||||||||| |||||||||    
T  49039470 ccacttattcaccttgaaaaaggtgaattctagccactaggctacttaaccaaaaaa 49039414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 447
Target Start/End: Original strand, 20610809 - 20610864
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaa 447  Q
    ||||||||||||||||||||| ||| |||||| ||||||| |||| ||||||||||    
T  20610809 ccacttattcaccttaaaaaaggtgaattctagccactagactacctgaccaaaaa 20610864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 33359887 - 33359943
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||||| ||||| ||| |||||| |||||||||||||| || ||||||    
T  33359887 ccacttattcaccttgaaaaaggtgaattctagccactaggctacttaacaaaaaaa 33359943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 457
Target Start/End: Complemental strand, 54854203 - 54854139
Alignment:
Q  393 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 457  Q
    |||||||||||||| ||||| ||| |||||| ||||||| ||||||||| |||||| ||| ||||    
T  54854203 cacttattcaccttgaaaaaagtgaattctagccactagactacttgacaaaaaaaaaaaaaaaa 54854139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 435
Target Start/End: Complemental strand, 18740941 - 18740898
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggcta 435  Q
    ||||||||||||||| ||||||||  ||||||||||||||||||    
T  18740941 ccacttattcaccttgaaaaatgttcattctaaccactaggcta 18740898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 432
Target Start/End: Original strand, 27921967 - 27922006
Alignment:
Q  393 cacttattcaccttaaaaaatgtgtattctaaccactagg 432  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  27921967 cacttattcatcttaaaaaatgtgaattctaaccactagg 27922006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 428
Target Start/End: Original strand, 39449470 - 39449505
Alignment:
Q  393 cacttattcaccttaaaaaatgtgtattctaaccac 428  Q
    |||||||||||||||||||||||| |||||||||||    
T  39449470 cacttattcaccttaaaaaatgtgaattctaaccac 39449505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 447
Target Start/End: Complemental strand, 8998400 - 8998347
Alignment:
Q  394 acttattcaccttaa-aaaatgtgtattctaaccactaggctacttgaccaaaaa 447  Q
    ||||||||||||||| |||||||| ||||||| ||||||||||||| ||||||||    
T  8998400 acttattcaccttaaaaaaatgtgaattctaa-cactaggctacttcaccaaaaa 8998347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 446
Target Start/End: Complemental strand, 41492524 - 41492470
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaa 446  Q
    ||||||||| ||||| ||||| ||| |||||| |||||||| |||||||||||||    
T  41492524 ccacttatttaccttgaaaaaggtgaattctagccactaggttacttgaccaaaa 41492470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 448
Target Start/End: Complemental strand, 21476106 - 21476052
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||| |||| |||  ||| |||||| ||||||||||||||||||||||||    
T  21476106 ccacttattcatcttataaa--gtgaattctagccactaggctacttgaccaaaaaa 21476052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 446
Target Start/End: Complemental strand, 23226729 - 23226676
Alignment:
Q  393 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaa 446  Q
    |||||||||||||||||||||||| ||| || ||||||  ||||||||| ||||    
T  23226729 cacttattcaccttaaaaaatgtgaattatagccactatactacttgacaaaaa 23226676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 33524265 - 33524220
Alignment:
Q  396 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgac 441  Q
    ||||||||| ||||||||||| ||| |||||||||| |||||||||    
T  33524265 ttattcaccataaaaaatgtgaattttaaccactagactacttgac 33524220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 36257764 - 36257818
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||| |||||||  ||| |||||| ||||||||||||| ||||||||||    
T  36257764 ccacttattcactttaaaaa--gtgaattctagccactaggctactagaccaaaaaa 36257818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 436
Target Start/End: Original strand, 47416521 - 47416582
Alignment:
Q  375 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctac 436  Q
    |||||||||||| ||  |||||||||||| || ||||| ||| ||||||||||||| |||||    
T  47416521 ttcgaatctcggacaccccacttattcactttgaaaaaggtgaattctaaccactaagctac 47416582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 448
Target Start/End: Original strand, 8965196 - 8965224
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||||||||||||||||    
T  8965196 tctaaccactaggctacttgaccaaaaaa 8965224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 21023377 - 21023337
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactagg 432  Q
    ||||||||||||||| ||||| ||| |||||||||||||||    
T  21023377 ccacttattcaccttgaaaaaggtgaattctaaccactagg 21023337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 448
Target Start/End: Original strand, 30057324 - 30057352
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||||||||||||||||    
T  30057324 tctaaccactaggctacttgaccaaaaaa 30057352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 448
Target Start/End: Original strand, 36132331 - 36132359
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||||||||||||||||    
T  36132331 tctaaccactaggctacttgaccaaaaaa 36132359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 448
Target Start/End: Complemental strand, 49280693 - 49280640
Alignment:
Q  393 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||||| ||   ||| |||||||||||||||||||||||| ||||||    
T  49280693 cacttattcaccttataag--gtgaattctaaccactaggctacttgacaaaaaaa 49280640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 371 - 441
Target Start/End: Original strand, 41000809 - 41000879
Alignment:
Q  371 gagattcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgac 441  Q
    |||||||||||| ||  ||| ||||||||||||||||||||||||| ||||||||||| || |||||||||    
T  41000809 gagattcgaatcccgaacatcccacttattcaccttaaaaaatgtgaattctaaccaccagactacttgac 41000879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 456
Target Start/End: Original strand, 3766913 - 3766949
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaataaataaa 456  Q
    |||||||||||||||||||||||||||||||||||||    
T  3766913 tctaaccactaggctacttgaccaaaaaataaataaa 3766949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 10958103 - 10958159
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||| |||||| ||| |||||| ||||||||||||| ||||||||||    
T  10958103 ccacttattcacctcaaaaaaggtgaattctagccactaggctactagaccaaaaaa 10958159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 44409270 - 44409326
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||||| ||||| ||| ||||||||||||||| |||||||| ||||||    
T  44409270 ccacttattcaccttgaaaaaggtgaattctaaccactaggttacttgacaaaaaaa 44409326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 457
Target Start/End: Original strand, 1649222 - 1649287
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 457  Q
    ||||||||||||||| ||||  ||| |||||| ||||||||||| |||||||||||| ||| ||||    
T  1649222 ccacttattcaccttgaaaatggtgaattctagccactaggctatttgaccaaaaaaaaaaaaaaa 1649287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 440
Target Start/End: Complemental strand, 32309190 - 32309125
Alignment:
Q  375 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttga 440  Q
    |||||||||| | ||  ||| ||||||||||||||||||||| |||||| ||||||| ||||||||    
T  32309190 ttcgaatctcagacaccccagttattcaccttaaaaaatgtgaattctagccactagactacttga 32309125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 456
Target Start/End: Original strand, 32814880 - 32814961
Alignment:
Q  375 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaa 456  Q
    |||||||| ||| ||  |||||||||||  | |||||| ||| ||| |||||||| | ||||||||||||||||||||||||    
T  32814880 ttcgaatcccggacaccccacttattcatataaaaaaaggtgaattttaaccactggactacttgaccaaaaaataaataaa 32814961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 407 - 456
Target Start/End: Original strand, 48053235 - 48053284
Alignment:
Q  407 aaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaa 456  Q
    |||||||||| ||||||||||||| || ||||||| ||||||||||||||    
T  48053235 aaaaaatgtgaattctaaccactaagcaacttgacaaaaaaataaataaa 48053284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 5773201 - 5773257
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||||| ||||| ||| |||||| ||||||||| ||||||| ||||||    
T  5773201 ccacttattcaccttgaaaaaggtggattctacccactaggcgacttgacaaaaaaa 5773257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 457
Target Start/End: Complemental strand, 29658297 - 29658234
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 457  Q
    |||||||||||||||| ||   ||| |||||| |||||||||||||||||||||||| ||| ||||    
T  29658297 ccacttattcaccttataag--gtgaattctagccactaggctacttgaccaaaaaaaaaaaaaaa 29658234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 457
Target Start/End: Complemental strand, 36316016 - 36315934
Alignment:
Q  375 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 457  Q
    |||||| ||||| ||  |||||||||||||||| | || ||| |||||||| |||| ||||||||||| ||||| ||| ||||    
T  36316016 ttcgaacctcggacaccccacttattcaccttatataaagtgaattctaacaactaagctacttgacctaaaaaaaaaaaaaa 36315934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 446
Target Start/End: Complemental strand, 3481193 - 3481140
Alignment:
Q  393 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaa 446  Q
    |||||||||||||||||||  ||| |||||||||||||  |||||||| |||||    
T  3481193 cacttattcaccttaaaaatggtgaattctaaccactaaactacttgatcaaaa 3481140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 11808108 - 11808165
Alignment:
Q  392 ccacttattcacctta-aaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||| ||||| ||| |||||||| ||||| ||||||||| ||||||    
T  11808108 ccacttattcaccttagaaaaacgtgaattctaacaactagactacttgacaaaaaaa 11808165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 25711173 - 25711101
Alignment:
Q  375 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||| ||||| ||  |||||||||||| ||| ||| |||| |||||| ||||||||||| ||||||||||||    
T  25711173 ttcgaacctcggacaccccacttattcactttataaa-tgtgaattctatccactaggctatttgaccaaaaaa 25711101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 457
Target Start/End: Complemental strand, 26734296 - 26734232
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 457  Q
    ||||||||||||||| ||||| ||| |||||| |||||||||||  ||| ||||||| ||||||||    
T  26734296 ccacttattcaccttgaaaaaggtgaattctagccactaggctatctga-caaaaaaaaaataaaa 26734232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 448
Target Start/End: Complemental strand, 28555877 - 28555820
Alignment:
Q  391 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||||||||| ||  |||||||| | ||||||| ||||| ||||||    
T  28555877 tccacttattcaccttaaaaaaggtaaattctaactattaggctatttgacaaaaaaa 28555820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 448
Target Start/End: Complemental strand, 42976626 - 42976569
Alignment:
Q  391 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||| |||||||| ||| |||||| | ||||| ||||||||| ||||||    
T  42976626 tccacttattcactttaaaaaaggtgaattctacctactagactacttgacaaaaaaa 42976569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 441
Target Start/End: Complemental strand, 7162696 - 7162644
Alignment:
Q  389 attccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgac 441  Q
    |||||||||||||| ||| ||||| ||| |||||||| ||||||||| |||||    
T  7162696 attccacttattcatcttgaaaaaggtgaattctaactactaggctatttgac 7162644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 448
Target Start/End: Complemental strand, 10020494 - 10020438
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||| ||| ||||| ||| |||||| ||||||| ||||||||| ||||||    
T  10020494 ccacttattcatcttgaaaaaggtgaattctacccactagcctacttgacaaaaaaa 10020438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 418 - 450
Target Start/End: Complemental strand, 17900880 - 17900848
Alignment:
Q  418 attctaaccactaggctacttgaccaaaaaata 450  Q
    |||||| ||||||||||||||||||||||||||    
T  17900880 attctagccactaggctacttgaccaaaaaata 17900848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 220404 - 220331
Alignment:
Q  375 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||| ||| ||  ||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||    
T  220404 ttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaaccactagactacttgaccaaaaaa 220331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 689559 - 689486
Alignment:
Q  375 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||| ||| ||  ||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||    
T  689559 ttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaaccactagactacttgaccaaaaaa 689486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 734027 - 733954
Alignment:
Q  375 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||| ||| ||  ||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||    
T  734027 ttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaaccactagactacttgaccaaaaaa 733954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 857923 - 857850
Alignment:
Q  375 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||| ||| ||  ||||||||||||||| ||||| ||| |||||||||||||| ||||||||||||||||    
T  857923 ttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaaccactagactacttgaccaaaaaa 857850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 375 - 435
Target Start/End: Complemental strand, 14011080 - 14011020
Alignment:
Q  375 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggcta 435  Q
    |||||| ||||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||    
T  14011080 ttcgaacctcggacatcccacttattcatcttaaaaaatgtgaattctaaccactaggcta 14011020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 452
Target Start/End: Complemental strand, 16808385 - 16808325
Alignment:
Q  392 ccacttattcaccttaaaaaat-gtgtattctaaccactaggctacttgaccaaaaaataaa 452  Q
    |||||||||||||||||||||  ||| ||||||||||||||||| ||||| |||||||||||    
T  16808385 ccacttattcaccttaaaaaaaagtgaattctaaccactaggctgcttga-caaaaaataaa 16808325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 420 - 457
Target Start/End: Complemental strand, 43085191 - 43085154
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaataaataaaa 457  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  43085191 tctaaccactaggctacttgaccaaaaaataaaaaaaa 43085154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 454
Target Start/End: Original strand, 29653123 - 29653187
Alignment:
Q  391 tccacttattcaccttaaaaaatg-tgtattctaaccactaggctacttgaccaaaaaataaata 454  Q
    |||||||||||||||||||||| | || |||||| ||||||  || |||||||||||||||||||    
T  29653123 tccacttattcaccttaaaaaaaggtgaattctagccactaaactgcttgaccaaaaaataaata 29653187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 448
Target Start/End: Complemental strand, 39208893 - 39208838
Alignment:
Q  393 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||| ||||| ||| |||||| ||||||| ||||||||| ||||||    
T  39208893 cacttattcacctttaaaaaggtgaattctagccactagactacttgacaaaaaaa 39208838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 453
Target Start/End: Complemental strand, 22438610 - 22438548
Alignment:
Q  391 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaat 453  Q
    |||||||||||||||||||||| ||| ||||||| ||||||  ||||| ||| ||||| ||||    
T  22438610 tccacttattcaccttaaaaaaggtgaattctaatcactagattactttacccaaaaaaaaat 22438548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 457
Target Start/End: Original strand, 11875988 - 11876025
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaataaataaaa 457  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  11875988 tctaaccactaggctacttgaccaaaaaaaaaaaaaaa 11876025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 457
Target Start/End: Original strand, 11890995 - 11891032
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaataaataaaa 457  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  11890995 tctaaccactaggctacttgaccaaaaaaaaaaaaaaa 11891032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 425
Target Start/End: Complemental strand, 26773731 - 26773694
Alignment:
Q  388 cattccacttattcaccttaaaaaatgtgtattctaac 425  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  26773731 cattccacttattcatcttaaaaaatgtgaattctaac 26773694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 431
Target Start/End: Complemental strand, 4604379 - 4604339
Alignment:
Q  391 tccacttattcaccttaaaaaatgtgtattctaaccactag 431  Q
    ||||||||||||||||||||||  || ||||||||||||||    
T  4604379 tccacttattcaccttaaaaaagatgaattctaaccactag 4604339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 18123931 - 18123987
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||| |||||||||| ||| |||||| || ||||  |||||||||||||||    
T  18123931 ccacttattctccttaaaaaaggtgaattctagccgctagattacttgaccaaaaaa 18123987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 456
Target Start/End: Original strand, 29514728 - 29514764
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaataaataaa 456  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  29514728 tctagccactaggctacttgacaaaaaaataaataaa 29514764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 448
Target Start/End: Original strand, 34413164 - 34413192
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||||||||||||||||    
T  34413164 tctaaccactaggctacttgaccaaaaaa 34413192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 448
Target Start/End: Original strand, 35818161 - 35818189
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||||||||||||||||    
T  35818161 tctaaccactaggctacttgaccaaaaaa 35818189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 457
Target Start/End: Complemental strand, 3535961 - 3535896
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 457  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| |||| |||||| ||| ||||    
T  3535961 ccacttattcaccttaaaaaaagtgaattctaaccactaggctacctgacaaaaaaaaaaaaaaaa 3535896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 436
Target Start/End: Complemental strand, 17137893 - 17137848
Alignment:
Q  391 tccacttattcaccttaaaaaatgtgtattctaaccactaggctac 436  Q
    |||||||||||||||| ||||| ||| |||||||||||||||||||    
T  17137893 tccacttattcaccttgaaaaacgtgaattctaaccactaggctac 17137848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 446
Target Start/End: Original strand, 18535985 - 18536038
Alignment:
Q  393 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaa 446  Q
    |||||||||||||| ||||| ||| |||||||||||||  ||||||||||||||    
T  18535985 cacttattcaccttgaaaaaagtgaattctaaccactaaactacttgaccaaaa 18536038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 448
Target Start/End: Original strand, 34325318 - 34325391
Alignment:
Q  375 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||  ||| | |||||||||||||||||||  || |||||| |||||| |||||||||| ||||||    
T  34325318 ttcgaatctcgaacatccaacttattcaccttaaaaaaaatgaattctagccactaagctacttgacaaaaaaa 34325391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 8934851 - 8934907
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||||| ||||| ||  |||||||||| ||| ||||||||||||||||    
T  8934851 ccacttattcacctttaaaaaggtaaattctaaccattagactacttgaccaaaaaa 8934907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 440
Target Start/End: Complemental strand, 37986892 - 37986844
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttga 440  Q
    ||||||||||||||| ||||| ||| |||||| ||||||||||||||||    
T  37986892 ccacttattcaccttgaaaaaggtgaattctagccactaggctacttga 37986844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 447
Target Start/End: Complemental strand, 36116904 - 36116850
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaa 447  Q
    ||||||||||| ||| ||||||||| |||||| | |||||||||||||||||||||    
T  36116904 ccacttattcatcttcaaaaatgtgaattctagc-actaggctacttgaccaaaaa 36116850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 431
Target Start/End: Original strand, 39684308 - 39684347
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactag 431  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  39684308 ccacttattcaccttaaaaaaggtgaattctaaccactag 39684347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Original strand, 20186934 - 20186983
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgac 441  Q
    ||||||||||||||| ||||| ||| ||| |||||||||| |||||||||    
T  20186934 ccacttattcaccttgaaaaaagtgaattataaccactagactacttgac 20186983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 448
Target Start/End: Original strand, 27006409 - 27006466
Alignment:
Q  391 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||| ||||| ||| |||||| ||  ||||||||||||| ||||||    
T  27006409 tccacttattcaccttgaaaaaggtgaattctagccgttaggctacttgacaaaaaaa 27006466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 452
Target Start/End: Original strand, 13862194 - 13862254
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaa 452  Q
    ||||||||||  ||| ||||| | | ||||||||||||||||||| |||| ||||||||||    
T  13862194 ccacttattcttcttgaaaaaggagaattctaaccactaggctacctgacaaaaaaataaa 13862254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 452
Target Start/End: Complemental strand, 22569213 - 22569181
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaataaa 452  Q
    |||| ||||||||||||||||||||||||||||    
T  22569213 tctagccactaggctacttgaccaaaaaataaa 22569181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 436
Target Start/End: Complemental strand, 22687906 - 22687862
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctac 436  Q
    ||||||||||||||| ||||| ||| |||||||||||||| ||||    
T  22687906 ccacttattcaccttgaaaaaggtgaattctaaccactagactac 22687862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 28537205 - 28537261
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||| || ||||  ||| |||||| ||||||||||||||||| ||||||    
T  28537205 ccacttattcactttgaaaatggtgaattctagccactaggctacttgacaaaaaaa 28537261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 440469 - 440525
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| |||| ||||||    
T  440469 ccacttattcaccttaaaaaaggtgaattctaaccactaggctacctgacaaaaaaa 440525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 38028607 - 38028663
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||||| ||||||||| |||||||| ||||||||||||||| ||||||    
T  38028607 ccacttattcaccttgaaaaatgtgaattctaactactaggctacttgacaaaaaaa 38028663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 453
Target Start/End: Original strand, 195114 - 195175
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaat 453  Q
    ||||||||||||||| ||||| ||| ||||||||||||| |||||||||| |||||| ||||    
T  195114 ccacttattcaccttgaaaaaggtgaattctaaccactaagctacttgacaaaaaaaaaaat 195175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 453
Target Start/End: Complemental strand, 2643840 - 2643779
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaat 453  Q
    ||||||||||||||||||||||||| | |||||||||||| |||| |||| |||||| ||||    
T  2643840 ccacttattcaccttaaaaaatgtgaactctaaccactagactacctgacaaaaaaaaaaat 2643779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 460
Target Start/End: Original strand, 3269712 - 3269753
Alignment:
Q  419 ttctaaccactaggctacttgaccaaaaaataaataaaataa 460  Q
    ||||| |||||||||||||||||||||||| |||||||||||    
T  3269712 ttctagccactaggctacttgaccaaaaaaaaaataaaataa 3269753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 457
Target Start/End: Complemental strand, 9768834 - 9768769
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 457  Q
    ||||||||||||||| ||||| ||| |||||| | |||||||||| ||||||||||| ||| ||||    
T  9768834 ccacttattcaccttgaaaaaggtgaattctagctactaggctacctgaccaaaaaaaaaaaaaaa 9768769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 457
Target Start/End: Original strand, 9931157 - 9931222
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 457  Q
    |||||||||||||||||| || ||| |||||||| ||||| ||||||||| |||||| ||| ||||    
T  9931157 ccacttattcaccttaaagaaggtgaattctaactactagactacttgacaaaaaaaaaaaaaaaa 9931222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 448
Target Start/End: Complemental strand, 3341761 - 3341705
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||||| ||||| ||| |||||| |||||||||| | |||||||||||    
T  3341761 ccacttattcaccttgaaaaaggtgaattctagccactaggctgcctgaccaaaaaa 3341705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 448
Target Start/End: Complemental strand, 9769605 - 9769549
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||||| ||||| ||| ||||||||||||| ||||| |||| ||||||    
T  9769605 ccacttattcaccttgaaaaaggtgaattctaaccactaagctacctgacaaaaaaa 9769549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 12553264 - 12553320
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||| || ||||| ||| |||||| |||||||||||| |||||||||||    
T  12553264 ccacttattcactttgaaaaaggtgaattctagccactaggctacctgaccaaaaaa 12553320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 19866545 - 19866601
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||||||||||| ||| |||||| ||||||  ||||||||| ||||||    
T  19866545 ccacttattcaccttaaaaaaggtgaattctagccactaaactacttgacaaaaaaa 19866601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 448
Target Start/End: Complemental strand, 23758273 - 23758221
Alignment:
Q  396 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||| |||||||| |||| |||||||||||||| ||||||||| ||||||    
T  23758273 ttattcatcttaaaaattgtgaattctaaccactagactacttgacaaaaaaa 23758221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 456
Target Start/End: Original strand, 33033228 - 33033264
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaataaataaa 456  Q
    |||||||||||| ||||||||||||||||||||||||    
T  33033228 tctaaccactagactacttgaccaaaaaataaataaa 33033264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 448
Target Start/End: Complemental strand, 48260214 - 48260158
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||||| ||||||||| |||||| ||| |||||| |||||| ||||||    
T  48260214 ccacttattcaccttgaaaaatgtgaattctagccattaggctccttgacaaaaaaa 48260158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 448
Target Start/End: Original strand, 50147598 - 50147650
Alignment:
Q  396 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||||||| ||| |||||||||||||  ||||||||| ||||||    
T  50147598 ttattcaccttaaaaaaagtgaattctaaccactaaactacttgacaaaaaaa 50147650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 448
Target Start/End: Original strand, 1721211 - 1721266
Alignment:
Q  393 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||||||| ||| |||||| ||  ||||||||||||| ||||||    
T  1721211 cacttattcaccttaaaaaaggtgaattctagccgttaggctacttgacaaaaaaa 1721266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 447
Target Start/End: Complemental strand, 2903052 - 2902997
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaa 447  Q
    ||||||||||||||| ||||| | | |||||| |||||||| ||||||||||||||    
T  2903052 ccacttattcaccttgaaaaaggagaattctagccactaggttacttgaccaaaaa 2902997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 427
Target Start/End: Original strand, 3261924 - 3261963
Alignment:
Q  388 cattccacttattcaccttaaaaaatgtgtattctaacca 427  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  3261924 cattccacttattcaccttgaaaaatgtgaattctaacca 3261963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 448
Target Start/End: Complemental strand, 4069636 - 4069581
Alignment:
Q  391 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||||| |   ||| |||||| ||||||||||||||||||||||||    
T  4069636 tccacttattcaccttaagag--gtgaattctacccactaggctacttgaccaaaaaa 4069581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 430
Target Start/End: Complemental strand, 4511550 - 4511512
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccacta 430  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  4511550 ccacttattcaccttaaaaaaggtgaattctaaccacta 4511512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 448
Target Start/End: Complemental strand, 7906348 - 7906294
Alignment:
Q  395 cttattcaccttaaaaaatgtgtattctaaccactaggctacttg-accaaaaaa 448  Q
    |||||| ||||||||||||||| |||||| |||||||| |||||| |||||||||    
T  7906348 cttattgaccttaaaaaatgtgaattctagccactagggtacttgaaccaaaaaa 7906294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 455
Target Start/End: Original strand, 9163354 - 9163415
Alignment:
Q  393 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataa 455  Q
    |||||||||| |||||||| |||| |||||| ||||||| |||| ||||||||||||| ||||    
T  9163354 cacttattcatcttaaaaa-tgtgaattctagccactagactacctgaccaaaaaatatataa 9163415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 449
Target Start/End: Original strand, 13941389 - 13941446
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaat 449  Q
    ||||||||||| ||| ||||| ||| |||||||||||||  ||||||||| |||||||    
T  13941389 ccacttattcatcttgaaaaaagtgaattctaaccactaaactacttgacaaaaaaat 13941446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 441
Target Start/End: Complemental strand, 23973507 - 23973458
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgac 441  Q
    |||||||||||| || ||||||||| |||||| ||||||| |||||||||    
T  23973507 ccacttattcacgttgaaaaatgtgaattctagccactagactacttgac 23973458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 436
Target Start/End: Original strand, 23750220 - 23750264
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctac 436  Q
    ||||||||||| ||| ||||| ||| |||||||||||||||||||    
T  23750220 ccacttattcatcttgaaaaaggtgaattctaaccactaggctac 23750264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 436
Target Start/End: Original strand, 41677130 - 41677174
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctac 436  Q
    ||||||||||||||| ||||| ||| |||||| ||||||||||||    
T  41677130 ccacttattcaccttgaaaaaggtgaattctagccactaggctac 41677174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 48497210 - 48497170
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaataaataaaataa 460  Q
    |||| |||||||||||||||||||||||  |||||||||||    
T  48497210 tctagccactaggctacttgaccaaaaataaaataaaataa 48497170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 453
Target Start/End: Original strand, 28951936 - 28951997
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaat 453  Q
    ||||||||||||||| ||||||||| |||||||||| || | ||||||||||||||| ||||    
T  28951936 ccacttattcaccttgaaaaatgtgaattctaaccattaagttacttgaccaaaaaaaaaat 28951997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 447
Target Start/End: Original strand, 33533273 - 33533328
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaa 447  Q
    ||||||||||||||||||||| ||| |||||||| ||||| ||||||||| |||||    
T  33533273 ccacttattcaccttaaaaaaagtgaattctaacaactagactacttgacaaaaaa 33533328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 448
Target Start/End: Original strand, 43911675 - 43911732
Alignment:
Q  391 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||| ||||||||| ||| |  ||||||||||||||||| ||||||    
T  43911675 tccacttattcaccttgaaaaatgtgaattattgccactaggctacttgacaaaaaaa 43911732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 420 - 457
Target Start/End: Complemental strand, 44764538 - 44764501
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaataaataaaa 457  Q
    |||| |||||||||||||||||||||||||||||||||    
T  44764538 tctagccactaggctacttgaccaaaaaataaataaaa 44764501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 448
Target Start/End: Complemental strand, 4010039 - 4009987
Alignment:
Q  396 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||| ||||   || |||||||||||||||||||||||||||||||    
T  4010039 ttattcaccttgaaaatgttgaattctaaccactaggctacttgaccaaaaaa 4009987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 457
Target Start/End: Complemental strand, 6054249 - 6054185
Alignment:
Q  393 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 457  Q
    |||||||||||||| ||||| ||| |||||||||||||| ||| ||||| |||||| ||| ||||    
T  6054249 cacttattcaccttgaaaaaggtgaattctaaccactagactatttgacaaaaaaaaaaaaaaaa 6054185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 40160805 - 40160853
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttga 440  Q
    ||||||||||||||| ||||| ||| |||||| ||||||||||||||||    
T  40160805 ccacttattcacctttaaaaaggtgaattctagccactaggctacttga 40160853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 452
Target Start/End: Original strand, 46798680 - 46798712
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaataaa 452  Q
    |||||||||||||||||||||||||||||||||    
T  46798680 tctaaccactaggctacttgaccaaaaaataaa 46798712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 458
Target Start/End: Original strand, 50724420 - 50724501
Alignment:
Q  375 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaat 458  Q
    |||||| ||||| ||  ||||||||||||||||||||  ||| |||||| |||||||||||| |||| |||||| || ||||||    
T  50724420 ttcgaacctcggacaccccacttattcaccttaaaaa--gtgaattctagccactaggctacctgacaaaaaaaaaagtaaaat 50724501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 3993706 - 3993676
Alignment:
Q  418 attctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||||||||||||||||||    
T  3993706 attctaaccactaggctacttgaccaaaaaa 3993676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 448
Target Start/End: Complemental strand, 50788428 - 50788357
Alignment:
Q  375 ttcgaatctcgggcattccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||| ||||| ||  ||||||||||||||||||||  ||| |||||| |||||||||||| |||| ||||||    
T  50788428 ttcgaacctcggacaccccacttattcaccttaaaaa--gtgaattctagccactaggctacctgacaaaaaaa 50788357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 440
Target Start/End: Original strand, 8724841 - 8724889
Alignment:
Q  391 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttga 440  Q
    ||||||||||||||||||||||||  | ||||||||||||| ||||||||    
T  8724841 tccacttattcaccttaaaaaatgaat-ttctaaccactagactacttga 8724889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 440
Target Start/End: Original strand, 9076728 - 9076776
Alignment:
Q  391 tccacttattcaccttaaaaaatgtgtattctaaccactaggctacttga 440  Q
    ||||||||||||||||||||||||  | ||||||||||||| ||||||||    
T  9076728 tccacttattcaccttaaaaaatgaat-ttctaaccactagactacttga 9076776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 456
Target Start/End: Complemental strand, 28206562 - 28206500
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaa 456  Q
    |||||||||||||||| ||   ||| ||||||||||||||||||| ||| ||| |||||||||||    
T  28206562 ccacttattcaccttataag--gtgaattctaaccactaggctacctgatcaataaataaataaa 28206500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 448
Target Start/End: Complemental strand, 16141350 - 16141322
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||||||||||||||||    
T  16141350 tctaaccactaggctacttgaccaaaaaa 16141322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 448
Target Start/End: Original strand, 32429849 - 32429877
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||||||||||||||||    
T  32429849 tctaaccactaggctacttgaccaaaaaa 32429877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 452
Target Start/End: Original strand, 36842232 - 36842292
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaa 452  Q
    |||||||||||| || ||||| ||| |||||||||||||  ||| ||||| ||||||||||    
T  36842232 ccacttattcactttgaaaaaagtgaattctaaccactaatctatttgacaaaaaaataaa 36842292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 448
Target Start/End: Complemental strand, 40956708 - 40956656
Alignment:
Q  396 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||| ||||||||| ||| |||||||||||||  ||||||||| ||||||    
T  40956708 ttattcagcttaaaaaaggtgaattctaaccactaaactacttgacaaaaaaa 40956656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 47497148 - 47497196
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttga 440  Q
    ||||||||||||||||||||| ||| ||| |||||||||  ||||||||    
T  47497148 ccacttattcaccttaaaaaaggtgaattttaaccactaaactacttga 47497196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 419 - 456
Target Start/End: Complemental strand, 15963912 - 15963875
Alignment:
Q  419 ttctaaccactaggctacttgaccaaaaaataaataaa 456  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  15963912 ttctagccactaggctacttgaccaaaaaataaataaa 15963875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 4844214 - 4844262
Alignment:
Q  393 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgac 441  Q
    |||||||||||||| ||||| ||| |||||||||||||| |||||||||    
T  4844214 cacttattcaccttgaaaaaagtgaattctaaccactagactacttgac 4844262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 17305587 - 17305642
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||||| ||||| ||| ||||||| ||||| |||||||||||||||||    
T  17305587 ccacttattcaccttgaaaaa-gtgaattctaatcactaagctacttgaccaaaaaa 17305642  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 448
Target Start/End: Original strand, 3243887 - 3243942
Alignment:
Q  393 cacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||||||| ||| |||||||||||||  |||| |||| ||||||    
T  3243887 cacttattcaccttaaaaaaggtgaattctaaccactaaactacctgacaaaaaaa 3243942  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 446
Target Start/End: Complemental strand, 3037614 - 3037560
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaa 446  Q
    ||||||||||| ||||||||| ||| ||||||||||||| |||||| ||| ||||    
T  3037614 ccacttattcatcttaaaaaaggtgaattctaaccactaagctactcgactaaaa 3037560  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 453
Target Start/End: Original strand, 25045841 - 25045875
Alignment:
Q  419 ttctaaccactaggctacttgaccaaaaaataaat 453  Q
    |||||||||||||||||||||||||||||| ||||    
T  25045841 ttctaaccactaggctacttgaccaaaaaaaaaat 25045875  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 460
Target Start/End: Complemental strand, 978105 - 978064
Alignment:
Q  419 ttctaaccactaggctacttgaccaaaaaataaataaaataa 460  Q
    |||||||||||| ||||||||||||||||| ||| |||||||    
T  978105 ttctaaccactaagctacttgaccaaaaaaaaaaaaaaataa 978064  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 457
Target Start/End: Original strand, 13732913 - 13732950
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaataaataaaa 457  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  13732913 tctaaccactaggctacttgaccaaaaaaaaaaaaaaa 13732950  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 448
Target Start/End: Original strand, 16119352 - 16119405
Alignment:
Q  396 ttattcacctt-aaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||| |||||||||| |||||| ||||||| ||||||||| ||||||    
T  16119352 ttattcaccttaaaaaaatgtgaattctagccactagactacttgacaaaaaaa 16119405  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 457
Target Start/End: Complemental strand, 26669684 - 26669619
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 457  Q
    ||||||||||||||| ||||| ||| |||||| ||||||  ||||||||| |||||| ||| ||||    
T  26669684 ccacttattcaccttgaaaaaggtgaattctagccactaaactacttgacaaaaaaaaaaaaaaaa 26669619  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 448
Target Start/End: Complemental strand, 9888493 - 9888465
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||||||||||||||||    
T  9888493 tctaaccactaggctacttgaccaaaaaa 9888465  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 448
Target Start/End: Original strand, 12291244 - 12291296
Alignment:
Q  396 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||| ||| |||||  |||||||||||||||||||||||| || ||||||    
T  12291244 ttattcagcttgaaaaagatgtattctaaccactaggctacttaacaaaaaaa 12291296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 448
Target Start/End: Complemental strand, 14949040 - 14948988
Alignment:
Q  396 ttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||| ||||| ||| ||| || ||||||||||| ||||||||||||    
T  14949040 ttattcaccttgaaaaaggtgaattatagccactaggctatttgaccaaaaaa 14948988  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 448
Target Start/End: Complemental strand, 16913869 - 16913841
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||||||||||||||||    
T  16913869 tctaaccactaggctacttgaccaaaaaa 16913841  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 17347324 - 17347380
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||||||||||| ||  |||||||||| ||| |||| |||| ||||||    
T  17347324 ccacttattcaccttaaaaaaggtaaattctaaccattagactacctgacaaaaaaa 17347380  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 448
Target Start/End: Complemental strand, 20150004 - 20149948
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||||| ||||| ||| |||||| | ||||| ||||||||| ||||||    
T  20150004 ccacttattcaccttgaaaaaggtgaattctatctactagcctacttgacaaaaaaa 20149948  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 448
Target Start/End: Original strand, 22182828 - 22182884
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||||| ||||| ||| |||||| | ||||| ||||||||| ||||||    
T  22182828 ccacttattcaccttgaaaaaggtgaattctatctactagcctacttgacaaaaaaa 22182884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 448
Target Start/End: Original strand, 28222964 - 28222992
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||||||||||||||||    
T  28222964 tctaaccactaggctacttgaccaaaaaa 28222992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 428
Target Start/End: Complemental strand, 29204894 - 29204858
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccac 428  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  29204894 ccacttattcaccttaaaaaaagtgaattctaaccac 29204858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 448
Target Start/End: Complemental strand, 30668209 - 30668153
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaa 448  Q
    ||||||||||||||||||||||||| ||| ||  |||||| ||||||| | ||||||    
T  30668209 ccacttattcaccttaaaaaatgtgaattatagtcactagactacttgtcaaaaaaa 30668153  T

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Target: scaffold0366 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 456
Target Start/End: Complemental strand, 828 - 792
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaataaataaa 456  Q
    |||| ||||||||||||||||||||||||||||||||    
T  828 tctagccactaggctacttgaccaaaaaataaataaa 792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 443
Target Start/End: Complemental strand, 37353 - 37302
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgacca 443  Q
    ||||||||||||||||||||||||| | | || ||||||||||| |||||||    
T  37353 ccacttattcaccttaaaaaatgtgaaatttagccactaggctatttgacca 37302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 457
Target Start/End: Original strand, 1109 - 1174
Alignment:
Q  392 ccacttattcaccttaaaaaatgtgtattctaaccactaggctacttgaccaaaaaataaataaaa 457  Q
    ||||||||||||||| ||||| ||| |||||| ||||||  ||||||||| |||||| ||| ||||    
T  1109 ccacttattcaccttgaaaaaggtgaattctagccactaaactacttgacaaaaaaaaaaaaaaaa 1174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 448
Target Start/End: Original strand, 23462 - 23490
Alignment:
Q  420 tctaaccactaggctacttgaccaaaaaa 448  Q
    |||||||||||||||||||||||||||||    
T  23462 tctaaccactaggctacttgaccaaaaaa 23490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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