View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2531_high_6 (Length: 216)
Name: NF2531_high_6
Description: NF2531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2531_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 44708030 - 44708207
Alignment:
| Q |
18 |
acggtggtcatgcgtcatcacagaaaatcaaccaccatagaggcatcaacctcccccggaggttgaannnnnnnnaaacaagaacatatatagataccga |
117 |
Q |
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| T |
44708030 |
acggtggtcatgcgtcattacagaaaatcaaccaccatagaggcatcaacctccc--ggaggttgaatttgctttaaacaagaacatatatagataccga |
44708127 |
T |
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| Q |
118 |
attcacgaccaaatttgtttttacttgacgagatgaatacttgcttgctttcggtccagatacatattgtccagattcat |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44708128 |
attcacgaccaaatttgtttttacttgacgagatgaatacttgcttgctttcggtccagatacatattgtccagaatcat |
44708207 |
T |
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