View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2531_low_1 (Length: 302)

Name: NF2531_low_1
Description: NF2531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2531_low_1
NF2531_low_1
[»] chr3 (4 HSPs)
chr3 (1-302)||(11005836-11006137)
chr3 (12-302)||(11015399-11015689)
chr3 (20-302)||(11024411-11024693)
chr3 (12-68)||(47452021-47452077)
[»] chr4 (32 HSPs)
chr4 (12-161)||(48891317-48891469)
chr4 (4-141)||(37827029-37827172)
chr4 (102-157)||(7877727-7877782)
chr4 (97-160)||(48170587-48170650)
chr4 (101-148)||(48902929-48902976)
chr4 (97-160)||(50669048-50669111)
chr4 (104-157)||(7908325-7908378)
chr4 (184-244)||(48852734-48852794)
chr4 (189-244)||(7773776-7773831)
chr4 (101-144)||(48735423-48735466)
chr4 (102-144)||(7237764-7237806)
chr4 (102-144)||(7771396-7771438)
chr4 (102-144)||(7790081-7790123)
chr4 (101-158)||(48147744-48147801)
chr4 (204-245)||(48705329-48705370)
chr4 (204-245)||(48735352-48735393)
chr4 (92-161)||(48852654-48852723)
chr4 (183-244)||(49044140-49044201)
chr4 (183-244)||(49048526-49048587)
chr4 (97-157)||(50250809-50250869)
chr4 (97-136)||(7813470-7813509)
chr4 (97-136)||(7822959-7822998)
chr4 (189-244)||(7877801-7877856)
chr4 (189-244)||(7908392-7908447)
chr4 (94-141)||(48156465-48156512)
chr4 (97-144)||(49048614-49048661)
chr4 (204-250)||(48875922-48875968)
chr4 (15-60)||(48870450-48870495)
chr4 (186-247)||(48870600-48870661)
chr4 (15-60)||(48886136-48886181)
chr4 (186-247)||(48886286-48886347)
chr4 (101-161)||(49041188-49041248)
[»] chr6 (2 HSPs)
chr6 (12-144)||(21015711-21015849)
chr6 (97-144)||(21979679-21979726)
[»] chr7 (1 HSPs)
chr7 (97-159)||(48883794-48883856)
[»] chr8 (3 HSPs)
chr8 (184-240)||(4031858-4031914)
chr8 (97-144)||(12200300-12200347)
chr8 (97-144)||(12444728-12444775)
[»] chr5 (3 HSPs)
chr5 (101-159)||(29696203-29696261)
chr5 (207-244)||(179122-179159)
chr5 (15-60)||(42562453-42562498)
[»] chr1 (5 HSPs)
chr1 (101-160)||(24310168-24310227)
chr1 (101-144)||(24367144-24367187)
chr1 (101-160)||(24369477-24369536)
chr1 (101-150)||(24340405-24340454)
chr1 (101-150)||(24352770-24352819)


Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 11006137 - 11005836
Alignment:
Q  1 ttattctttacacatctacctatggaatccatccactggacgtctcaaacaaataccttttcctccttccaatttagatgcaaaatatgtatgttgtcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11006137 ttattctttacacatctacctatggaatccatccactggacgtctcagacaaataccttttcctccttccaatttagatgcaaaatatgtatgttgtcta 11006038  T
Q  101 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgataaaagtatagacccaattgaagataatatttcatcacgtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11006037 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgataaaagtgtagacccaattgaagataatatttcatcacgtt 11005938  T
Q  201 tgaagtttttctcattgagagcgaatacatggaaagaaattgagtgtcctggattggtgaagtatactcatttcccttattatatgaatgcaaatgatga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11005937 tgaagtttttctcattgagagcgaatacatggaaagaaattgagtgtcatggattggtgaagtatactcacttcccttattatatgaatgcaaatgatga 11005838  T
Q  301 tc 302  Q
    ||    
T  11005837 tc 11005836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 11015689 - 11015399
Alignment:
Q  12 acatctacctatggaatccatccactggacgtctcaaacaaataccttttcctccttccaatttagatgcaaaatatgtatgttgtctatatggttttgg 111  Q
    |||||||||||||||||||||| ||||||| || ||||||||||||||||||| |||||||||||||||| ||||||  ||||||||| |||||||||||    
T  11015689 acatctacctatggaatccatcaactggacatcacaaacaaataccttttcctgcttccaatttagatgccaaatattcatgttgtctgtatggttttgg 11015590  T
Q  112 gtatgaccattcaagagatgattacttggtggtatcagtgtcctatgataaaagtatagacccaattgaagataatatttcatcacgtttgaagtttttc 211  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||| | || ||||||||||| |||| |||||||||||||    
T  11015589 gtatgaccatttaagagatgattacttggtggtatcagtgtcctataatacaagtatagacccagtagacgataatatttcttcacatttgaagtttttc 11015490  T
Q  212 tcattgagagcgaatacatggaaagaaattgagtgtcctggattggtgaagtatactcatttcccttattatatgaatgcaaatgatgatc 302  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| || ||||||| ||| |||||||||||||||||||||||||||||||    
T  11015489 tcattgagagctaatacatggaacgaaattgagtgtcctggatttgtaaagtataatcacttcccttattatatgaatgcaaatgatgatc 11015399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 11024693 - 11024411
Alignment:
Q  20 ctatggaatccatccactggacgtctcaaacaaataccttttcctccttccaatttagatgcaaaatatgtatgttgtctatatggttttgggtatgacc 119  Q
    |||||||||||||| ||  ||| || |||  ||||||| ||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||    
T  11024693 ctatggaatccatcgaccagacatcacaagaaaataccatttcctccttccaatttagatgccaaatattcatgttgtctatatggttttgggtatgacc 11024594  T
Q  120 attcaagagatgattacttggtggtatcagtgtcctatgataaaagtatagacccaattgaagataatatttcatcacgtttgaagtttttctcattgag 219  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||| ||||||||||||||| |||||    
T  11024593 attcaagagatgattacttggtggtatcagtgtcctatgataagagtatagacctaattgaagaaaatatttcatcacatttgaagtttttctctttgag 11024494  T
Q  220 agcgaatacatggaaagaaattgagtgtcctggattggtgaagtatactcatttcccttattatatgaatgcaaatgatgatc 302  Q
    ||| ||||||||||| ||||||||||||| |||||||||||||||||  || ||||||||||||||||||| |||||||||||    
T  11024493 agctaatacatggaacgaaattgagtgtcttggattggtgaagtataagcacttcccttattatatgaatgtaaatgatgatc 11024411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 47452077 - 47452021
Alignment:
Q  12 acatctacctatggaatccatccactggacgtctcaaacaaataccttttcctcctt 68  Q
    |||||||| ||||||||||||||||||||  || ||||||||||||||| |||||||    
T  47452077 acatctacatatggaatccatccactggagttcacaaacaaatacctttgcctcctt 47452021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 48891317 - 48891469
Alignment:
Q  12 acatctacctatggaatccatccactggacgtctcaaacaaataccttttcctcct------tccaatttagatgcaaaatatgtatgttgtctatatgg 105  Q
    |||||||  ||||||||||||||||||||| || |||||||||||||||  |||||      || |  |||||||| || ||| |||||| |||||||||    
T  48891317 acatctatgtatggaatccatccactggacttcacaaacaaatacctttgtctcctattgattcgaggttagatgccaactatttatgttatctatatgg 48891416  T
Q  106 ttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgata 161  Q
    |||| |||||||    | |||||||||||| |||||||| ||||||||||||||||    
T  48891417 ttttaggtatgag---ttaagagatgattagttggtggtttcagtgtcctatgata 48891469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 37827172 - 37827029
Alignment:
Q  4 ttctttacacatctacctatggaatccatccactggacgtctcaaacaaataccttttcctcct------tccaatttagatgcaaaatatgtatgttgt 97  Q
    ||||||| |||||||| ||||||||||||||||||||  || |||||||||||| ||  |||||      |||||||| || | | | ||| |  ||| |    
T  37827172 ttctttaaacatctacatatggaatccatccactggatttcacaaacaaatacccttgtctccttttaactccaatttggaagaatattatttcggttct 37827073  T
Q  98 ctatatggttttgggtatgaccattcaagagatgattacttggt 141  Q
    |||||||||||||| |||||||| || |||||||||||||||||    
T  37827072 ctatatggttttggttatgaccagtctagagatgattacttggt 37827029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 7877727 - 7877782
Alignment:
Q  102 atggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctat 157  Q
    |||||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||    
T  7877727 atggttttggttatgaccaatcaagagatgattacttggtggtttcattgtcctat 7877782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 48170650 - 48170587
Alignment:
Q  97 tctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgat 160  Q
    ||||||||||||||||||||| || | ||||||||||||||| ||||| |||||||||| ||||    
T  48170650 tctatatggttttgggtatgatcagttaagagatgattacttagtggtttcagtgtcctgtgat 48170587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 48902929 - 48902976
Alignment:
Q  101 tatggttttgggtatgaccattcaagagatgattacttggtggtatca 148  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||    
T  48902929 tatggttttgggtatgaccactcaagagatgattacttgatggtatca 48902976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 50669048 - 50669111
Alignment:
Q  97 tctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgat 160  Q
    ||||||||||||||| |||||||  |||||||||||||||||||| || ||| |||||||||||    
T  50669048 tctatatggttttggttatgaccggtcaagagatgattacttggttgtttcattgtcctatgat 50669111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 7908325 - 7908378
Alignment:
Q  104 ggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctat 157  Q
    |||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||    
T  7908325 ggttttggttatgaccagtcaagagatgattacttggtggtttcattgtcctat 7908378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 48852734 - 48852794
Alignment:
Q  184 taatatttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgag 244  Q
    |||| ||||||||| |||  ||||||||||||||||||| ||| |||||||||||||||||    
T  48852734 taatgtttcatcacatttagagtttttctcattgagagctaatgcatggaaagaaattgag 48852794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 7773831 - 7773776
Alignment:
Q  189 tttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgag 244  Q
    ||||| |||||||||||||||||||||| ||||  |||||||||||||||| ||||    
T  7773831 tttcaacacgtttgaagtttttctcatttagagataatacatggaaagaaactgag 7773776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 48735466 - 48735423
Alignment:
Q  101 tatggttttgggtatgaccattcaagagatgattacttggtggt 144  Q
    |||||||||||||||||||||| || ||||||||||||||||||    
T  48735466 tatggttttgggtatgaccatttaacagatgattacttggtggt 48735423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 144
Target Start/End: Complemental strand, 7237806 - 7237764
Alignment:
Q  102 atggttttgggtatgaccattcaagagatgattacttggtggt 144  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  7237806 atggttttggttatgaccagtcaagagatgattacttggtggt 7237764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 7771396 - 7771438
Alignment:
Q  102 atggttttgggtatgaccattcaagagatgattacttggtggt 144  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  7771396 atggttttggttatgaccagtcaagagatgattacttggtggt 7771438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 7790081 - 7790123
Alignment:
Q  102 atggttttgggtatgaccattcaagagatgattacttggtggt 144  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  7790081 atggttttggttatgaccagtcaagagatgattacttggtggt 7790123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 158
Target Start/End: Complemental strand, 48147801 - 48147744
Alignment:
Q  101 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatg 158  Q
    |||||||||||||||||||| | || |||||||||||||||||| ||| | |||||||    
T  48147801 tatggttttgggtatgaccagttaacagatgattacttggtggtttcattctcctatg 48147744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 48705370 - 48705329
Alignment:
Q  204 agtttttctcattgagagcgaatacatggaaagaaattgagt 245  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  48705370 agtttttctcattgagagttaatacatggaaagaaattgagt 48705329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 245
Target Start/End: Complemental strand, 48735393 - 48735352
Alignment:
Q  204 agtttttctcattgagagcgaatacatggaaagaaattgagt 245  Q
    ||||||||||||||||||| ||||| ||||||||||||||||    
T  48735393 agtttttctcattgagagctaatacctggaaagaaattgagt 48735352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 48852654 - 48852723
Alignment:
Q  92 tgttgtctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgata 161  Q
    |||| |||||||||||||||||||||||  ||||  |||||||||||||| || | | ||||||||||||    
T  48852654 tgttatctatatggttttgggtatgacccgtcaaccgatgattacttggtagttttaatgtcctatgata 48852723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 49044201 - 49044140
Alignment:
Q  183 ataatatttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgag 244  Q
    |||||||||||| || |||| ||||||||||||||||||  |||| |||||| |||||||||    
T  49044201 ataatatttcattacatttggagtttttctcattgagagataatagatggaatgaaattgag 49044140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 49048587 - 49048526
Alignment:
Q  183 ataatatttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgag 244  Q
    ||||| ||||||||| |||| |||||||||| |||||||  |||| ||||||||||||||||    
T  49048587 ataatttttcatcacatttggagtttttctcgttgagagataatatatggaaagaaattgag 49048526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 50250869 - 50250809
Alignment:
Q  97 tctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctat 157  Q
    ||||||||||||||| |||||||| |||| ||||||||| |||||||| ||| | ||||||    
T  50250869 tctatatggttttggttatgaccactcaacagatgattatttggtggtttcaatatcctat 50250809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 7813470 - 7813509
Alignment:
Q  97 tctatatggttttgggtatgaccattcaagagatgattac 136  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  7813470 tctatatggttttggttatgaccagtcaagagatgattac 7813509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 136
Target Start/End: Original strand, 7822959 - 7822998
Alignment:
Q  97 tctatatggttttgggtatgaccattcaagagatgattac 136  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  7822959 tctatatggttttggttatgaccagtcaagagatgattac 7822998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 7877801 - 7877856
Alignment:
Q  189 tttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgag 244  Q
    ||||| ||| |||||||||||||||||| ||||  |||||||||||||||| ||||    
T  7877801 tttcaacacatttgaagtttttctcatttagagataatacatggaaagaaactgag 7877856  T

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Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 7908392 - 7908447
Alignment:
Q  189 tttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgag 244  Q
    ||||| ||| |||||||||||||||| | ||||  |||||||||||||||||||||    
T  7908392 tttcaacacatttgaagtttttctcagttagagataatacatggaaagaaattgag 7908447  T

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Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 48156512 - 48156465
Alignment:
Q  94 ttgtctatatggttttgggtatgaccattcaagagatgattacttggt 141  Q
    |||||||||||| ||||||||||| || | ||||||||||||||||||    
T  48156512 ttgtctatatggatttgggtatgatcaattaagagatgattacttggt 48156465  T

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Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 49048661 - 49048614
Alignment:
Q  97 tctatatggttttgggtatgaccattcaagagatgattacttggtggt 144  Q
    |||||||||||||||||||||||  |||| ||||||||| ||||||||    
T  49048661 tctatatggttttgggtatgacccatcaacagatgattatttggtggt 49048614  T

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Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 48875922 - 48875968
Alignment:
Q  204 agtttttctcattgagagcgaatacatggaaagaaattgagtgtcct 250  Q
    ||||||||||||||||||| ||||| |||| | ||||||||||||||    
T  48875922 agtttttctcattgagagccaatacctggatacaaattgagtgtcct 48875968  T

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Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 48870450 - 48870495
Alignment:
Q  15 tctacctatggaatccatccactggacgtctcaaacaaataccttt 60  Q
    |||||||||||||||||||||| |||  || |||||||||||||||    
T  48870450 tctacctatggaatccatccaccggatttcacaaacaaataccttt 48870495  T

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Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 48870600 - 48870661
Alignment:
Q  186 atatttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgagtgt 247  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||| |||| | |||||||||||    
T  48870600 atatttcatcacacttcgagtttttctcattgagagccaatacctggatacaaattgagtgt 48870661  T

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Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 48886136 - 48886181
Alignment:
Q  15 tctacctatggaatccatccactggacgtctcaaacaaataccttt 60  Q
    |||||||||||||||||||||| |||  || |||||||||||||||    
T  48886136 tctacctatggaatccatccaccggatttcacaaacaaataccttt 48886181  T

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Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 48886286 - 48886347
Alignment:
Q  186 atatttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaattgagtgt 247  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||| |||| | |||||||||||    
T  48886286 atatttcatcacacttcgagtttttctcattgagagccaatacctggatacaaattgagtgt 48886347  T

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Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 49041248 - 49041188
Alignment:
Q  101 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgata 161  Q
    ||||||||||||||||| |  |||| ||||||||||||| |||| ||||| || |||||||    
T  49041248 tatggttttgggtatgatccgtcaacagatgattacttgatggtttcagtatcgtatgata 49041188  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 21015711 - 21015849
Alignment:
Q  12 acatctacctatggaatccatccactggacgtctcaaacaaataccttttcctcct------tccaatttagatgcaaaatatgtatgttgtctatatgg 105  Q
    |||||||||||||||||||||||||| ||  || |||||||||||||||  |||||      ||  |||||| ||  || ||| |||||| |||||||||    
T  21015711 acatctacctatggaatccatccactagagttcacaaacaaatacctttgtctcctaatagttcatatttaggtgtcaattatatatgttatctatatgg 21015810  T
Q  106 ttttgggtatgaccattcaagagatgattacttggtggt 144  Q
    ||||||||||||||  |||| ||||||||| ||||||||    
T  21015811 ttttgggtatgacccatcaacagatgattatttggtggt 21015849  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 21979726 - 21979679
Alignment:
Q  97 tctatatggttttgggtatgaccattcaagagatgattacttggtggt 144  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  21979726 tctatatggttttggttatgaccagtcaagaaatgattacttggtggt 21979679  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 48883794 - 48883856
Alignment:
Q  97 tctatatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatga 159  Q
    ||||||||||||||| |||||||  ||||||||||||||| ||||||| ||| ||||||||||    
T  48883794 tctatatggttttggttatgacccgtcaagagatgattacatggtggtttcaatgtcctatga 48883856  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 4031914 - 4031858
Alignment:
Q  184 taatatttcatcacgtttgaagtttttctcattgagagcgaatacatggaaagaaat 240  Q
    |||||||||||||| |||| ||||||||||| ||||||| || ||||||||||||||    
T  4031914 taatatttcatcacatttggagtttttctcactgagagccaacacatggaaagaaat 4031858  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 12200300 - 12200347
Alignment:
Q  97 tctatatggttttgggtatgaccattcaagagatgattacttggtggt 144  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||    
T  12200300 tctatatggttttggttatgaccggtcaagagatgattacttggtggt 12200347  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 12444728 - 12444775
Alignment:
Q  97 tctatatggttttgggtatgaccattcaagagatgattacttggtggt 144  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||||    
T  12444728 tctatatggttttggttatgaccggtcaagagatgattacttggtggt 12444775  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 29696203 - 29696261
Alignment:
Q  101 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatga 159  Q
    |||||||||||||||||| | |||| |||||||||||||||| | ||| ||||||||||    
T  29696203 tatggttttgggtatgacgagtcaacagatgattacttggtgatttcaatgtcctatga 29696261  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 179122 - 179159
Alignment:
Q  207 ttttctcattgagagcgaatacatggaaagaaattgag 244  Q
    |||||||||||||||  |||||||||||||||||||||    
T  179122 ttttctcattgagagataatacatggaaagaaattgag 179159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 42562498 - 42562453
Alignment:
Q  15 tctacctatggaatccatccactggacgtctcaaacaaataccttt 60  Q
    |||||||||||||||||||||  |||| || |||||||||||||||    
T  42562498 tctacctatggaatccatccatcggacatcacaaacaaataccttt 42562453  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 24310168 - 24310227
Alignment:
Q  101 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgat 160  Q
    ||||||||||| |||||| | |||||||||||||||||||| || | ||| |||||||||    
T  24310168 tatggttttggttatgacgagtcaagagatgattacttggtagttttagtatcctatgat 24310227  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 24367144 - 24367187
Alignment:
Q  101 tatggttttgggtatgaccattcaagagatgattacttggtggt 144  Q
    |||||||||||||||||| | |||| ||||||||||||||||||    
T  24367144 tatggttttgggtatgacaagtcaacagatgattacttggtggt 24367187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 24369477 - 24369536
Alignment:
Q  101 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagtgtcctatgat 160  Q
    ||||||||||| |||||| | |||| |||||||||| ||||||| ||||| |||||||||    
T  24369477 tatggttttggctatgacgagtcaacagatgattacctggtggtttcagtatcctatgat 24369536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 24340405 - 24340454
Alignment:
Q  101 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagt 150  Q
    |||||||||||||||||| | |||| | |||||||||||||||| |||||    
T  24340405 tatggttttgggtatgacgaatcaacatatgattacttggtggtttcagt 24340454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 24352770 - 24352819
Alignment:
Q  101 tatggttttgggtatgaccattcaagagatgattacttggtggtatcagt 150  Q
    |||||||||||||||||| | |||| | |||||||||||||||| |||||    
T  24352770 tatggttttgggtatgacgaatcaacatatgattacttggtggtttcagt 24352819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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