View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2531_low_3 (Length: 242)

Name: NF2531_low_3
Description: NF2531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2531_low_3
NF2531_low_3
[»] scaffold0016 (2 HSPs)
scaffold0016 (90-229)||(204605-204744)
scaffold0016 (9-92)||(204807-204890)
[»] chr2 (15 HSPs)
chr2 (175-225)||(27889308-27889358)
chr2 (179-229)||(32957539-32957589)
chr2 (179-220)||(5028880-5028921)
chr2 (179-220)||(27017506-27017547)
chr2 (92-127)||(37398812-37398847)
chr2 (92-131)||(44152377-44152416)
chr2 (179-229)||(41859867-41859917)
chr2 (184-221)||(29896295-29896332)
chr2 (184-220)||(3904226-3904262)
chr2 (184-220)||(9547410-9547446)
chr2 (185-229)||(14735895-14735939)
chr2 (189-229)||(16221352-16221392)
chr2 (184-220)||(18611964-18612000)
chr2 (91-127)||(28898180-28898216)
chr2 (186-218)||(35458789-35458821)
[»] chr3 (20 HSPs)
chr3 (186-229)||(19126680-19126723)
chr3 (184-220)||(8127487-8127523)
chr3 (179-223)||(20612273-20612317)
chr3 (184-224)||(28965778-28965818)
chr3 (186-229)||(43630421-43630464)
chr3 (184-218)||(35557119-35557153)
chr3 (92-130)||(55283105-55283143)
chr3 (184-222)||(55395325-55395363)
chr3 (179-220)||(20018221-20018262)
chr3 (179-220)||(32843258-32843299)
chr3 (179-220)||(34442443-34442484)
chr3 (179-220)||(42886505-42886546)
chr3 (184-220)||(3695683-3695719)
chr3 (94-130)||(5452058-5452094)
chr3 (184-220)||(21245817-21245853)
chr3 (95-127)||(22856235-22856267)
chr3 (184-220)||(33745123-33745159)
chr3 (92-128)||(52123954-52123990)
chr3 (189-229)||(52575962-52576002)
chr3 (184-220)||(53162222-53162258)
[»] chr1 (19 HSPs)
chr1 (92-127)||(50539530-50539565)
chr1 (184-229)||(48100737-48100782)
chr1 (179-223)||(4715554-4715598)
chr1 (184-220)||(40735006-40735042)
chr1 (184-222)||(23203344-23203382)
chr1 (184-222)||(34083359-34083397)
chr1 (184-229)||(2613737-2613782)
chr1 (184-229)||(13778576-13778621)
chr1 (175-220)||(29739361-29739406)
chr1 (189-229)||(11410642-11410682)
chr1 (184-220)||(13401621-13401657)
chr1 (184-220)||(13590134-13590170)
chr1 (184-220)||(17917139-17917175)
chr1 (182-222)||(21015984-21016024)
chr1 (184-224)||(23979417-23979457)
chr1 (189-229)||(25942658-25942698)
chr1 (189-229)||(31426776-31426816)
chr1 (184-220)||(43356459-43356495)
chr1 (189-229)||(45701343-45701383)
[»] chr7 (18 HSPs)
chr7 (186-220)||(14623488-14623522)
chr7 (184-216)||(44651529-44651561)
chr7 (189-220)||(8261449-8261480)
chr7 (187-229)||(6565540-6565582)
chr7 (179-229)||(9522927-9522977)
chr7 (185-223)||(30753747-30753785)
chr7 (184-222)||(38553840-38553878)
chr7 (184-218)||(45151403-45151437)
chr7 (187-229)||(47342692-47342734)
chr7 (184-229)||(7908608-7908653)
chr7 (184-221)||(25251533-25251570)
chr7 (184-229)||(27993030-27993075)
chr7 (190-231)||(30397082-30397123)
chr7 (184-220)||(10026018-10026054)
chr7 (184-220)||(18773757-18773793)
chr7 (184-220)||(19578138-19578174)
chr7 (92-132)||(25686829-25686869)
chr7 (193-225)||(48069847-48069879)
[»] chr5 (13 HSPs)
chr5 (184-222)||(5551282-5551320)
chr5 (184-222)||(43135022-43135060)
chr5 (194-229)||(16193122-16193157)
chr5 (179-217)||(133561-133599)
chr5 (92-130)||(4714895-4714933)
chr5 (186-220)||(32559328-32559362)
chr5 (186-231)||(9169515-9169560)
chr5 (186-218)||(3052207-3052239)
chr5 (184-220)||(18789060-18789096)
chr5 (184-220)||(21657399-21657435)
chr5 (91-127)||(26072249-26072285)
chr5 (185-229)||(27903128-27903172)
chr5 (91-127)||(32050453-32050489)
[»] chr8 (19 HSPs)
chr8 (184-229)||(41603076-41603121)
chr8 (186-224)||(1135396-1135435)
chr8 (186-229)||(28580959-28581002)
chr8 (92-130)||(1961404-1961442)
chr8 (179-229)||(9192223-9192273)
chr8 (92-130)||(16983540-16983578)
chr8 (184-218)||(45049601-45049635)
chr8 (184-229)||(8137950-8137995)
chr8 (179-224)||(13124359-13124404)
chr8 (184-229)||(34420863-34420908)
chr8 (185-218)||(39139000-39139033)
chr8 (186-222)||(1230664-1230700)
chr8 (184-220)||(3672617-3672653)
chr8 (186-222)||(4479764-4479800)
chr8 (91-127)||(7599565-7599601)
chr8 (184-224)||(16392591-16392631)
chr8 (184-220)||(24429823-24429859)
chr8 (184-220)||(32115407-32115443)
chr8 (186-218)||(35149263-35149295)
[»] chr4 (18 HSPs)
chr4 (185-222)||(38767036-38767073)
chr4 (184-224)||(32923204-32923244)
chr4 (184-223)||(4916176-4916215)
chr4 (91-126)||(40812039-40812074)
chr4 (92-130)||(8109102-8109140)
chr4 (101-135)||(11895193-11895227)
chr4 (179-229)||(16431631-16431681)
chr4 (184-222)||(22164270-22164308)
chr4 (184-222)||(50152385-50152423)
chr4 (184-221)||(17948137-17948174)
chr4 (175-224)||(24675061-24675110)
chr4 (186-219)||(29731382-29731415)
chr4 (101-130)||(50571987-50572016)
chr4 (184-229)||(50668355-50668400)
chr4 (184-220)||(1657031-1657067)
chr4 (185-229)||(22411779-22411823)
chr4 (185-221)||(32268104-32268140)
chr4 (184-220)||(51749852-51749888)
[»] chr6 (12 HSPs)
chr6 (184-220)||(12735244-12735280)
chr6 (180-220)||(15062315-15062355)
chr6 (92-127)||(19737433-19737468)
chr6 (185-220)||(30579883-30579918)
chr6 (184-222)||(8138459-8138497)
chr6 (179-220)||(9609539-9609580)
chr6 (184-220)||(1989044-1989080)
chr6 (184-220)||(9333981-9334017)
chr6 (184-220)||(15169955-15169991)
chr6 (184-220)||(15178727-15178763)
chr6 (184-220)||(23507392-23507428)
chr6 (184-220)||(24623318-24623354)
[»] scaffold0012 (2 HSPs)
scaffold0012 (184-223)||(118840-118879)
scaffold0012 (189-225)||(177699-177735)
[»] scaffold0021 (1 HSPs)
scaffold0021 (184-229)||(161156-161201)
[»] scaffold1149 (1 HSPs)
scaffold1149 (184-220)||(2356-2392)
[»] scaffold0050 (1 HSPs)
scaffold0050 (184-220)||(53381-53417)
[»] scaffold0011 (1 HSPs)
scaffold0011 (184-220)||(189973-190009)


Alignment Details
Target: scaffold0016 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 90 - 229
Target Start/End: Complemental strand, 204744 - 204605
Alignment:
Q  90 actagagagaatgttcaaaaaagagtgttgctagcattacttttgtggtcatattagatgatgcagtccgtaattttttgtagggggtagccgcggtttg 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||| || ||||||||    
T  204744 actagagagaatgttcaaaaaagagtgttgctagcattacttttgtggtcacatcagatgatgcagtccgtaattttttgtaggtggtggctgcggtttg 204645  T
Q  190 aaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  204644 aaccccgaaccttacatattttatgcattgttcatgccaa 204605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 204890 - 204807
Alignment:
Q  9 gaagaatattgaggccacgagggatggtagcaagtagcaacactcacatttttattggatgaaagtaaattatgtctcatcact 92  Q
    ||||||||||| |||||||||| ||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  204890 gaagaatattgtggccacgaggaatattagcaagtagcaacactcacattttaattggatgaaagtaaattatgtctcatcact 204807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 27889358 - 27889308
Alignment:
Q  175 ggtagccgcggtttgaaccccaaaccttacatattttatgcattgttcatg 225  Q
    |||||| | |||||||||| |||||||||||||||||||||||||||||||    
T  27889358 ggtagctggggtttgaacctcaaaccttacatattttatgcattgttcatg 27889308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 32957539 - 32957589
Alignment:
Q  179 gccgcggtttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    |||| ||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  32957539 gccgaggtttaaaccccaaaccttacatatattatgcattgttcataccaa 32957589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 5028921 - 5028880
Alignment:
Q  179 gccgcggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||| ||||||||||||||||||||||||| |||||||||||    
T  5028921 gccggggtttgaaccccaaaccttacatatattatgcattgt 5028880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 27017506 - 27017547
Alignment:
Q  179 gccgcggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  27017506 gccgcggtttgaaccccaaaccttgcctattttatgcattgt 27017547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 37398847 - 37398812
Alignment:
Q  92 tagagagaatgttcaaaaaagagtgttgctagcatt 127  Q
    ||||||||||| ||||||||||||||||||||||||    
T  37398847 tagagagaatgctcaaaaaagagtgttgctagcatt 37398812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 44152377 - 44152416
Alignment:
Q  92 tagagagaatgttcaaaaaagagtgttgctagcattactt 131  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  44152377 tagagagaatgttgaacaaagagtgttgctagcattactt 44152416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 41859917 - 41859867
Alignment:
Q  179 gccgcggtttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    |||| ||||||||||||| ||||| ||||||||||||||||| ||| ||||    
T  41859917 gccggggtttgaaccccagaccttgcatattttatgcattgtccataccaa 41859867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 29896295 - 29896332
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgtt 221  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  29896295 ggtttgaaccccaaaccttgcatatattatgcattgtt 29896332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 3904262 - 3904226
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  3904262 ggtttgaaccccagaccttacatatattatgcattgt 3904226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 9547410 - 9547446
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  9547410 ggtttgaaccccaaaccttgcatatattatgcattgt 9547446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 14735895 - 14735939
Alignment:
Q  185 gtttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    ||||||||| | |||||||||||||||||||||||| ||| ||||    
T  14735895 gtttgaacctcgaaccttacatattttatgcattgtccataccaa 14735939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 16221352 - 16221392
Alignment:
Q  189 gaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    ||||||| |||||| ||||||||||||||||||||| ||||    
T  16221352 gaaccccgaaccttgcatattttatgcattgttcataccaa 16221392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 18611964 - 18612000
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  18611964 ggtttgaaccccaaaccttgcatatattatgcattgt 18612000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 28898180 - 28898216
Alignment:
Q  91 ctagagagaatgttcaaaaaagagtgttgctagcatt 127  Q
    ||||||||| || ||||||||||||||||||||||||    
T  28898180 ctagagagagtgctcaaaaaagagtgttgctagcatt 28898216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 35458789 - 35458821
Alignment:
Q  186 tttgaaccccaaaccttacatattttatgcatt 218  Q
    ||||||||||||||||||||||| |||||||||    
T  35458789 tttgaaccccaaaccttacatatattatgcatt 35458821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 19126680 - 19126723
Alignment:
Q  186 tttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||    
T  19126680 tttgaaccccaaaccttacatattttatgcattgtccataccaa 19126723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 8127523 - 8127487
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    ||||||||||||||||||| |||||||||||||||||    
T  8127523 ggtttgaaccccaaaccttgcatattttatgcattgt 8127487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 20612273 - 20612317
Alignment:
Q  179 gccgcggtttgaaccccaaaccttacatattttatgcattgttca 223  Q
    |||| ||||||||||||||||||| ||||| ||||||||||||||    
T  20612273 gccggggtttgaaccccaaaccttgcatatattatgcattgttca 20612317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 28965778 - 28965818
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttcat 224  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  28965778 ggtttgaaccccgaaccttacatatattatgcattgttcat 28965818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 43630421 - 43630464
Alignment:
Q  186 tttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    |||||||| |||||||||||||| ||||||||||||||| ||||    
T  43630421 tttgaacctcaaaccttacatatattatgcattgttcataccaa 43630464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 35557153 - 35557119
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcatt 218  Q
    ||||||||||||| |||||||||||||||||||||    
T  35557153 ggtttgaaccccagaccttacatattttatgcatt 35557119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 55283143 - 55283105
Alignment:
Q  92 tagagagaatgttcaaaaaagagtgttgctagcattact 130  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  55283143 tagagagaatgtttaaaaaagagtgttgttagcattact 55283105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 55395325 - 55395363
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttc 222  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  55395325 ggtttgaaccccaaaccttacatatattatgtattgttc 55395363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 20018262 - 20018221
Alignment:
Q  179 gccgcggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||| ||||||||||||| ||||| |||||||||||||||||    
T  20018262 gccgaggtttgaaccccagaccttgcatattttatgcattgt 20018221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 32843258 - 32843299
Alignment:
Q  179 gccgcggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||| ||||||||||||| ||||| |||||||||||||||||    
T  32843258 gccggggtttgaaccccagaccttgcatattttatgcattgt 32843299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 34442443 - 34442484
Alignment:
Q  179 gccgcggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||| ||||||||||||  |||||||||||||||||||||||    
T  34442443 gccggggtttgaaccccggaccttacatattttatgcattgt 34442484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 42886505 - 42886546
Alignment:
Q  179 gccgcggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||| |||||||||||| |||||| |||||||||||||||||    
T  42886505 gccgaggtttgaaccccgaaccttgcatattttatgcattgt 42886546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 3695683 - 3695719
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||||||||||| |||||| |||||||||||||||||    
T  3695683 ggtttgaaccccgaacctttcatattttatgcattgt 3695719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 5452094 - 5452058
Alignment:
Q  94 gagagaatgttcaaaaaagagtgttgctagcattact 130  Q
    |||||| ||||||||| ||||||||||||||||||||    
T  5452094 gagagagtgttcaaaagagagtgttgctagcattact 5452058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 21245853 - 21245817
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  21245853 ggtttgaaccccagaccttacatatattatgcattgt 21245817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 22856267 - 22856235
Alignment:
Q  95 agagaatgttcaaaaaagagtgttgctagcatt 127  Q
    ||||||||||||||||||||||||| |||||||    
T  22856267 agagaatgttcaaaaaagagtgttgttagcatt 22856235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 33745159 - 33745123
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  33745159 ggtttgaaccccagaccttgcatattttatgcattgt 33745123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 52123990 - 52123954
Alignment:
Q  92 tagagagaatgttcaaaaaagagtgttgctagcatta 128  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  52123990 tagagagagtgttcaaaagagagtgttgctagcatta 52123954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 52576002 - 52575962
Alignment:
Q  189 gaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    |||||||| ||||| ||||||||||||||||||||| ||||    
T  52576002 gaaccccagaccttgcatattttatgcattgttcataccaa 52575962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 53162258 - 53162222
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||||||||| |||||||| |||||||||||||||||    
T  53162258 ggtttgaacctcaaaccttgcatattttatgcattgt 53162222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 50539530 - 50539565
Alignment:
Q  92 tagagagaatgttcaaaaaagagtgttgctagcatt 127  Q
    ||||||||||||||||||||||||||||||||||||    
T  50539530 tagagagaatgttcaaaaaagagtgttgctagcatt 50539565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 48100782 - 48100737
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    ||||||||||||||||||| ||||||||||||||||| ||| ||||    
T  48100782 ggtttgaaccccaaaccttgcatattttatgcattgtccataccaa 48100737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 4715554 - 4715598
Alignment:
Q  179 gccgcggtttgaaccccaaaccttacatattttatgcattgttca 223  Q
    |||| |||| |||||||||||||| ||||||||||||||||||||    
T  4715554 gccgaggttcgaaccccaaaccttgcatattttatgcattgttca 4715598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 40735006 - 40735042
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||||||||||| ||||||||||||||||||||||||    
T  40735006 ggtttgaaccccgaaccttacatattttatgcattgt 40735042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 23203382 - 23203344
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttc 222  Q
    |||||||||||| |||||| |||||||||||||||||||    
T  23203382 ggtttgaaccccgaaccttgcatattttatgcattgttc 23203344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 34083397 - 34083359
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttc 222  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  34083397 ggttcgaaccccaaaccttacatatattatgcattgttc 34083359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 2613782 - 2613737
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    |||| ||||||| |||||||||||||||||||||||| ||| ||||    
T  2613782 ggttcgaaccccgaaccttacatattttatgcattgtccataccaa 2613737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 13778621 - 13778576
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    |||||||||||| |||||| ||||||||||||||| ||||| ||||    
T  13778621 ggtttgaaccccgaaccttgcatattttatgcattattcataccaa 13778576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 29739406 - 29739361
Alignment:
Q  175 ggtagccgcggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||||||| ||||||||||||  ||||| |||||||||||||||||    
T  29739406 ggtagccgaggtttgaaccccggaccttgcatattttatgcattgt 29739361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 11410682 - 11410642
Alignment:
Q  189 gaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    |||||||| ||||||||||||||||| ||||||||| ||||    
T  11410682 gaaccccagaccttacatattttatgtattgttcataccaa 11410642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 13401657 - 13401621
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||||||||||| |||||||||||| |||||||||||    
T  13401657 ggtttgaaccccgaaccttacatatattatgcattgt 13401621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 13590170 - 13590134
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    ||||||||| || ||||||||||||||||||||||||    
T  13590170 ggtttgaactccgaaccttacatattttatgcattgt 13590134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 17917139 - 17917175
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  17917139 ggtttgaatcccgaaccttacatattttatgcattgt 17917175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 21016024 - 21015984
Alignment:
Q  182 gcggtttgaaccccaaaccttacatattttatgcattgttc 222  Q
    |||||| ||||||| |||||||||||| |||||||||||||    
T  21016024 gcggttcgaaccccgaaccttacatatattatgcattgttc 21015984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 23979417 - 23979457
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttcat 224  Q
    ||||||||||||||||| ||||||| ||||| |||||||||    
T  23979417 ggtttgaaccccaaaccatacatatattatgtattgttcat 23979457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 25942658 - 25942698
Alignment:
Q  189 gaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    ||||||| ||||||| |||||||||||||||||||| ||||    
T  25942658 gaaccccgaaccttatatattttatgcattgttcataccaa 25942698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 31426816 - 31426776
Alignment:
Q  189 gaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    ||||| ||||||||| |||||||||||||||||| ||||||    
T  31426816 gaacctcaaaccttatatattttatgcattgttcttgccaa 31426776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 43356495 - 43356459
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  43356495 ggtttgaactccaaaccttacatatattatgcattgt 43356459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 45701383 - 45701343
Alignment:
Q  189 gaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    |||| ||| ||||||||||||||||||||||||||| ||||    
T  45701383 gaactccagaccttacatattttatgcattgttcataccaa 45701343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 14623488 - 14623522
Alignment:
Q  186 tttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||||||||||||||||||||||||||||||||||    
T  14623488 tttgaaccccaaaccttacatattttatgcattgt 14623522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 44651561 - 44651529
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgca 216  Q
    |||||||||||||||||||||||||||||||||    
T  44651561 ggtttgaaccccaaaccttacatattttatgca 44651529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 8261449 - 8261480
Alignment:
Q  189 gaaccccaaaccttacatattttatgcattgt 220  Q
    ||||||||||||||||||||||||||||||||    
T  8261449 gaaccccaaaccttacatattttatgcattgt 8261480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 6565582 - 6565540
Alignment:
Q  187 ttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||    
T  6565582 ttgaaccccagaccttgcatattttatgcattgttcataccaa 6565540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 9522977 - 9522927
Alignment:
Q  179 gccgcggtttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    |||| |||| |||||||||||||| ||||| ||||||||||||||| ||||    
T  9522977 gccggggttcgaaccccaaaccttgcatatattatgcattgttcataccaa 9522927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 30753785 - 30753747
Alignment:
Q  185 gtttgaaccccaaaccttacatattttatgcattgttca 223  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  30753785 gtttgaactccagaccttacatattttatgcattgttca 30753747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 38553878 - 38553840
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttc 222  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  38553878 ggttcgaaccccaaaccttacatatattatgcattgttc 38553840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 45151437 - 45151403
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcatt 218  Q
    ||||||||||||||||||||||||| |||||||||    
T  45151437 ggtttgaaccccaaaccttacatatattatgcatt 45151403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 47342734 - 47342692
Alignment:
Q  187 ttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    |||||||||||||||| ||||||||||||||||| ||| ||||    
T  47342734 ttgaaccccaaaccttgcatattttatgcattgtccataccaa 47342692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 7908653 - 7908608
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    |||| ||||||| |||||||||||||||||||||||| ||| ||||    
T  7908653 ggttcgaaccccgaaccttacatattttatgcattgtccataccaa 7908608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 25251570 - 25251533
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgtt 221  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  25251570 ggtttgaaccccaaaccttatatatattatgcattgtt 25251533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 27993030 - 27993075
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    ||||||||||| | ||||| ||||||||||||||||||||| ||||    
T  27993030 ggtttgaaccctagaccttgcatattttatgcattgttcataccaa 27993075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 231
Target Start/End: Complemental strand, 30397123 - 30397082
Alignment:
Q  190 aaccccaaaccttacatattttatgcattgttcatgccaaat 231  Q
    |||||| |||||||||||||||||||||||| ||| ||||||    
T  30397123 aaccccgaaccttacatattttatgcattgtccataccaaat 30397082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 10026054 - 10026018
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  10026054 ggtttgaaccccataccttgcatattttatgcattgt 10026018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 18773757 - 18773793
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    ||||||||||||  |||||||||||||||||||||||    
T  18773757 ggtttgaaccccggaccttacatattttatgcattgt 18773793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 19578138 - 19578174
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  19578138 ggtttgaaccccagaccttgcatattttatgcattgt 19578174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 25686869 - 25686829
Alignment:
Q  92 tagagagaatgttcaaaaaagagtgttgctagcattacttt 132  Q
    |||| ||||||||||||| |||||||||||| |||||||||    
T  25686869 tagaaagaatgttcaaaagagagtgttgctaacattacttt 25686829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 48069847 - 48069879
Alignment:
Q  193 cccaaaccttacatattttatgcattgttcatg 225  Q
    |||||||||||||||| ||||||||||||||||    
T  48069847 cccaaaccttacatatattatgcattgttcatg 48069879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 5551282 - 5551320
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttc 222  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  5551282 ggtttgaaccccaaaccttgcatattttatgcattgttc 5551320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 43135060 - 43135022
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttc 222  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  43135060 ggtttgaaccccaaaccttgcatattttatgcattgttc 43135022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 16193157 - 16193122
Alignment:
Q  194 ccaaaccttacatattttatgcattgttcatgccaa 229  Q
    ||||||||||||||||||||||||||||||| ||||    
T  16193157 ccaaaccttacatattttatgcattgttcataccaa 16193122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 133561 - 133599
Alignment:
Q  179 gccgcggtttgaaccccaaaccttacatattttatgcat 217  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  133561 gccggggtttgaaacccaaaccttacatattttatgcat 133599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 4714895 - 4714933
Alignment:
Q  92 tagagagaatgttcaaaaaagagtgttgctagcattact 130  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  4714895 tagagagaatgttcaaaagagagtgttgctagcactact 4714933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 32559362 - 32559328
Alignment:
Q  186 tttgaaccccaaaccttacatattttatgcattgt 220  Q
    ||||||||||| |||||||||||||||||||||||    
T  32559362 tttgaaccccagaccttacatattttatgcattgt 32559328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 9169515 - 9169560
Alignment:
Q  186 tttgaaccccaaaccttacatattttatgcattgttcatgccaaat 231  Q
    |||||||| ||||| || ||||||||||||||||| ||||||||||    
T  9169515 tttgaacctcaaacgttgcatattttatgcattgtacatgccaaat 9169560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 3052239 - 3052207
Alignment:
Q  186 tttgaaccccaaaccttacatattttatgcatt 218  Q
    ||||||||||||||||||||||| |||||||||    
T  3052239 tttgaaccccaaaccttacatatattatgcatt 3052207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 18789096 - 18789060
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||||||||||| |||||| |||||||||||||||||    
T  18789096 ggtttgaaccccgaaccttgcatattttatgcattgt 18789060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 21657399 - 21657435
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||||||||| |||||||||||||| |||||||||||    
T  21657399 ggtttgaacctcaaaccttacatatattatgcattgt 21657435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 26072249 - 26072285
Alignment:
Q  91 ctagagagaatgttcaaaaaagagtgttgctagcatt 127  Q
    |||||||||||| |||||| |||||||||||||||||    
T  26072249 ctagagagaatgctcaaaagagagtgttgctagcatt 26072285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 27903172 - 27903128
Alignment:
Q  185 gtttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    ||||||||||| |||||| ||||| ||||||||||||||| ||||    
T  27903172 gtttgaaccccgaaccttgcatatattatgcattgttcataccaa 27903128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 32050453 - 32050489
Alignment:
Q  91 ctagagagaatgttcaaaaaagagtgttgctagcatt 127  Q
    |||||||||||| |||||| |||||||||||||||||    
T  32050453 ctagagagaatgctcaaaagagagtgttgctagcatt 32050489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 41603121 - 41603076
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    ||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  41603121 ggtttgaaccccagaccttacatatattatgcattgttcataccaa 41603076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 1135396 - 1135435
Alignment:
Q  186 tttgaaccccaaaccttacatatt-ttatgcattgttcat 224  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  1135396 tttgaaccccaaaccttacatattattatgcattgttcat 1135435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 28581002 - 28580959
Alignment:
Q  186 tttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||    
T  28581002 tttgaaccccgaaccttacatattttatgcattattcataccaa 28580959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 1961404 - 1961442
Alignment:
Q  92 tagagagaatgttcaaaaaagagtgttgctagcattact 130  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  1961404 tagagagagtgttcaaaagagagtgttgctagcattact 1961442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 9192223 - 9192273
Alignment:
Q  179 gccgcggtttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    |||| ||||||||||||| || |||||||| ||||||||||||||| ||||    
T  9192223 gccggggtttgaaccccagactttacatatattatgcattgttcataccaa 9192273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 16983540 - 16983578
Alignment:
Q  92 tagagagaatgttcaaaaaagagtgttgctagcattact 130  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  16983540 tagagagagtgttcaaaagagagtgttgctagcattact 16983578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 218
Target Start/End: Complemental strand, 45049635 - 45049601
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcatt 218  Q
    |||||||||||| ||||||||||||||||||||||    
T  45049635 ggtttgaaccccgaaccttacatattttatgcatt 45049601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 8137995 - 8137950
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    |||||||||||||||| || ||||||||||||||||| ||| ||||    
T  8137995 ggtttgaaccccaaactttgcatattttatgcattgtccataccaa 8137950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 13124359 - 13124404
Alignment:
Q  179 gccgcggtttgaaccccaaaccttacatattttatgcattgttcat 224  Q
    |||| ||||||||||||  ||||| |||||||||||||||||||||    
T  13124359 gccggggtttgaaccccggaccttgcatattttatgcattgttcat 13124404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 34420863 - 34420908
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    |||||||||| |||||||| ||||||||||||||||| ||| ||||    
T  34420863 ggtttgaacctcaaaccttgcatattttatgcattgtccataccaa 34420908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 218
Target Start/End: Original strand, 39139000 - 39139033
Alignment:
Q  185 gtttgaaccccaaaccttacatattttatgcatt 218  Q
    ||||||||||| ||||||||||||||||||||||    
T  39139000 gtttgaaccccgaaccttacatattttatgcatt 39139033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Original strand, 1230664 - 1230700
Alignment:
Q  186 tttgaaccccaaaccttacatattttatgcattgttc 222  Q
    |||||||| |||||||||||||| |||||||||||||    
T  1230664 tttgaacctcaaaccttacatatattatgcattgttc 1230700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 3672617 - 3672653
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  3672617 ggtttgaaccctaaaccttgcatattttatgcattgt 3672653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 4479800 - 4479764
Alignment:
Q  186 tttgaaccccaaaccttacatattttatgcattgttc 222  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  4479800 tttgaaccccaaactttatatattttatgcattgttc 4479764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 7599565 - 7599601
Alignment:
Q  91 ctagagagaatgttcaaaaaagagtgttgctagcatt 127  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  7599565 ctagagagagtgttcaaaaaagagtgttgctaacatt 7599601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 16392631 - 16392591
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttcat 224  Q
    |||||||||||||||||||  |||||||||||||| |||||    
T  16392631 ggtttgaaccccaaaccttgtatattttatgcatttttcat 16392591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 24429859 - 24429823
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  24429859 ggttcgaaccccgaaccttacatattttatgcattgt 24429823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 32115407 - 32115443
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||||||||||| |||||||||||| |||||||||||    
T  32115407 ggtttgaaccccgaaccttacatatattatgcattgt 32115443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 35149263 - 35149295
Alignment:
Q  186 tttgaaccccaaaccttacatattttatgcatt 218  Q
    |||||||||||||||||||||||||||| ||||    
T  35149263 tttgaaccccaaaccttacatattttatacatt 35149295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 38767036 - 38767073
Alignment:
Q  185 gtttgaaccccaaaccttacatattttatgcattgttc 222  Q
    |||||||||||||||||||||||| |||||||||||||    
T  38767036 gtttgaaccccaaaccttacatatgttatgcattgttc 38767073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 32923204 - 32923244
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttcat 224  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  32923204 ggtttgaaccccgaaccttacatatattatgcattgttcat 32923244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 4916215 - 4916176
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttca 223  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  4916215 ggtttgaaccccaaatcttacatatattatgcattgttca 4916176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 126
Target Start/End: Complemental strand, 40812074 - 40812039
Alignment:
Q  91 ctagagagaatgttcaaaaaagagtgttgctagcat 126  Q
    ||||||||| ||||||||||||||||||||||||||    
T  40812074 ctagagagagtgttcaaaaaagagtgttgctagcat 40812039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 8109102 - 8109140
Alignment:
Q  92 tagagagaatgttcaaaaaagagtgttgctagcattact 130  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  8109102 tagagagagtgttcaaaagagagtgttgctagcattact 8109140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 135
Target Start/End: Original strand, 11895193 - 11895227
Alignment:
Q  101 tgttcaaaaaagagtgttgctagcattacttttgt 135  Q
    ||||||||| |||||||||||||||||||||||||    
T  11895193 tgttcaaaagagagtgttgctagcattacttttgt 11895227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 16431681 - 16431631
Alignment:
Q  179 gccgcggtttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    |||| ||||||||||||| ||||| ||||||||||||||||| ||| ||||    
T  16431681 gccggggtttgaaccccagaccttgcatattttatgcattgtccataccaa 16431631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 22164270 - 22164308
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttc 222  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  22164270 ggtttgaaccccagaccttacatatattatgcattgttc 22164308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 50152423 - 50152385
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttc 222  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  50152423 ggtttgaaccccatcccttacatattttatgcattgttc 50152385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 17948137 - 17948174
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgtt 221  Q
    ||||||||| || |||||||||||||||||||||||||    
T  17948137 ggtttgaactccgaaccttacatattttatgcattgtt 17948174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 24675061 - 24675110
Alignment:
Q  175 ggtagccgcggtttgaaccccaaaccttacatattttatgcattgttcat 224  Q
    |||||||| | ||||||||||||| ||| ||||| |||||||||||||||    
T  24675061 ggtagccgggatttgaaccccaaatcttgcatatattatgcattgttcat 24675110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 29731382 - 29731415
Alignment:
Q  186 tttgaaccccaaaccttacatattttatgcattg 219  Q
    |||||||||||||| |||||||||||||||||||    
T  29731382 tttgaaccccaaacattacatattttatgcattg 29731415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 130
Target Start/End: Original strand, 50571987 - 50572016
Alignment:
Q  101 tgttcaaaaaagagtgttgctagcattact 130  Q
    ||||||||||||||||||||||||||||||    
T  50571987 tgttcaaaaaagagtgttgctagcattact 50572016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 50668400 - 50668355
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    |||||||||||| |||||||||||| ||||| ||||||||| ||||    
T  50668400 ggtttgaaccccgaaccttacatatattatgtattgttcataccaa 50668355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 1657031 - 1657067
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||| |||||||||||||||||||| |||||||||||    
T  1657031 ggttcgaaccccaaaccttacatatattatgcattgt 1657067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 22411823 - 22411779
Alignment:
Q  185 gtttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    ||||||||||| |||||||||||| ||||||||||| ||| ||||    
T  22411823 gtttgaaccccgaaccttacatatattatgcattgtccataccaa 22411779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 32268140 - 32268104
Alignment:
Q  185 gtttgaaccccaaaccttacatattttatgcattgtt 221  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  32268140 gtttgaaccccaaacctttcatatattatgcattgtt 32268104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 51749888 - 51749852
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  51749888 ggtttaaaccccaaaccttacatatgttatgcattgt 51749852  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 12735244 - 12735280
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    ||||||||||||||||||| |||||||||||||||||    
T  12735244 ggtttgaaccccaaaccttgcatattttatgcattgt 12735280  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 15062355 - 15062315
Alignment:
Q  180 ccgcggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||||||| ||||||| ||||||||||||||||||||||||    
T  15062355 ccgcggttcgaaccccgaaccttacatattttatgcattgt 15062315  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 19737468 - 19737433
Alignment:
Q  92 tagagagaatgttcaaaaaagagtgttgctagcatt 127  Q
    |||||||||||||||||| |||||||||||||||||    
T  19737468 tagagagaatgttcaaaagagagtgttgctagcatt 19737433  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 30579918 - 30579883
Alignment:
Q  185 gtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||||||||||||||||| |||||||||||||||||    
T  30579918 gtttgaaccccaaaccttgcatattttatgcattgt 30579883  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 8138459 - 8138497
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttc 222  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  8138459 ggtttgaaccccagaccttacatatattatgcattgttc 8138497  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 9609580 - 9609539
Alignment:
Q  179 gccgcggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||||||||||| ||||||| ||| |||||||||||||||||    
T  9609580 gccgcggtttgagccccaaatcttgcatattttatgcattgt 9609539  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 1989044 - 1989080
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||||||||| |||||||||||||| |||||||||||    
T  1989044 ggtttgaacctcaaaccttacatatattatgcattgt 1989080  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 9333981 - 9334017
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||| |||||||||||||||||||| |||||||||||    
T  9333981 ggttcgaaccccaaaccttacatatattatgcattgt 9334017  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 15169991 - 15169955
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||||||||||| |||||||||||| |||||||||||    
T  15169991 ggtttgaaccccgaaccttacatatattatgcattgt 15169955  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 15178763 - 15178727
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||||||||||| |||||||||||| |||||||||||    
T  15178763 ggtttgaaccccgaaccttacatatattatgcattgt 15178727  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 23507392 - 23507428
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||| |||||||||||||||||||||||||| |||||    
T  23507392 ggttcgaaccccaaaccttacatattttatgtattgt 23507428  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 24623318 - 24623354
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||||||||||| |||||||||||| |||||||||||    
T  24623318 ggtttgaaccccgaaccttacatatattatgcattgt 24623354  T

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Target: scaffold0012 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 118879 - 118840
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttca 223  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  118879 ggtttgaactccagaccttacatattttatgcattgttca 118840  T

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Target: scaffold0012; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 177699 - 177735
Alignment:
Q  189 gaaccccaaaccttacatattttatgcattgttcatg 225  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  177699 gaacccaaaaccttacatattttatgcattgtccatg 177735  T

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Target: scaffold0021 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 161201 - 161156
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgttcatgccaa 229  Q
    |||||||||||| |||||| ||||||||||||||||| ||| ||||    
T  161201 ggtttgaaccccgaaccttgcatattttatgcattgtccataccaa 161156  T

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Target: scaffold1149 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 2392 - 2356
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  2392 ggtttgaaccccaaaccttgcatatattatgcattgt 2356  T

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Target: scaffold0050 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 53381 - 53417
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  53381 ggtttgaaccccagaccttgcatattttatgcattgt 53417  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 189973 - 190009
Alignment:
Q  184 ggtttgaaccccaaaccttacatattttatgcattgt 220  Q
    |||||||||||| |||||||||||| |||||||||||    
T  189973 ggtttgaaccccgaaccttacatatattatgcattgt 190009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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