View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2531_low_5 (Length: 229)
Name: NF2531_low_5
Description: NF2531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2531_low_5 |
 | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0016 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 6 - 171
Target Start/End: Original strand, 203810 - 203978
Alignment:
| Q |
6 |
actttgaagctggatgaaaga---aggtttctacaaggaaaacatggccaacagggctttccatacaaaagcttcgttttcaacttcttccctaaaggat |
102 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
203810 |
actttgaagctggatgaaagaagaaggtttctacaaggaaaacatggccaacagggctttccatacaaaagcttggttttcaacttcttccctaaaggat |
203909 |
T |
|
| Q |
103 |
cagtgccaccttcaggtccttcaaagagacataacaaaattgttgattcaacacctcagaattaagtcc |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
203910 |
cagtgccaccttcaggtccttcaaagagacataacaaaattgttgattcaacacctcagaattaagtcc |
203978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University