View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_high_11 (Length: 412)
Name: NF2532_high_11
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 24200089 - 24199889
Alignment:
| Q |
1 |
caatgctaatccttctttcttccaaatcagagagaggaattctcattttagtcagaaaggaaatggcatcggttgaggaacctggtgtgatgactaagtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
24200089 |
caatgctaatccttctttcttccaaatcagagagaggaattctcattttagtcagaaaggaaatcgcatcggttgaggaacctggtgtgatggctaagtc |
24199990 |
T |
|
| Q |
101 |
atc------------tgttgaaggactcttgataatttgttttccatcaaaattagattcgacttgcttagacaaaaaatctgatttggatttaaaatat |
188 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24199989 |
atctgttaccatatatgttgaaggactcttgataatttgttttccatcaaaattagattcgacttgcttagacaaaaaatctgatttggatttaaaatat |
24199890 |
T |
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| Q |
189 |
c |
189 |
Q |
| |
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| |
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| T |
24199889 |
c |
24199889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 24192156 - 24191945
Alignment:
| Q |
1 |
caatgctaatccttctttcttccaaatcagagagaggaattctcattttagtcagaaaggaaatggcatcggttgaggaacctggtgtgatgactaagtc |
100 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24192156 |
caatgctaatcattctttcttgcaaatcagagagaggaattctcattttagtcagaaaggaaatcgcatcggttgaggaacctggtgtgatgactaagtc |
24192057 |
T |
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| Q |
101 |
atc------------tgttgaaggactcttgataatttgttttccatcaaaattagattcgacttgcttagacaaaaaatctgatttggatttaaaatat |
188 |
Q |
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||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| |
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| T |
24192056 |
atctgttaccatatatgttgaaggactcttgatgatttgttttccatcaaaattagattttacttgcttagacaataaatctgatttggatctaaaatat |
24191957 |
T |
|
| Q |
189 |
ctttcaggatcc |
200 |
Q |
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|||||||||||| |
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| T |
24191956 |
ctttcaggatcc |
24191945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 197 - 334
Target Start/End: Complemental strand, 24197348 - 24197211
Alignment:
| Q |
197 |
atcccataattattgggatagttagcgggtatatgggaagaattattcaaaaagattttatcaatnnnnnnnnnnnnnggtgtggcacttatgaatacaa |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24197348 |
atcccataattattgggatagttagcgggtatatgggaagaactattcaaaaagattttatcaataaaaaagaaaaaaggtgtggcacttatgaatacaa |
24197249 |
T |
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| Q |
297 |
atggcatcacaaggcaatggaaaattattattcttccg |
334 |
Q |
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||||||||| |||||||| ||||||||||||||||||| |
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| T |
24197248 |
atggcatcagaaggcaatagaaaattattattcttccg |
24197211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 24190079 - 24190032
Alignment:
| Q |
201 |
cataattattgggatagttagcgggtatatgggaagaattattcaaaa |
248 |
Q |
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||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
24190079 |
cataattgttgggatagttagcgggtaagagggaagaattattcaaaa |
24190032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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