View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_high_13 (Length: 404)
Name: NF2532_high_13
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 13 - 389
Target Start/End: Original strand, 4189927 - 4190303
Alignment:
| Q |
13 |
aatattaaggcaaataaatgtttatgcatatgaaacttatggtgtaatgaaatatatttggcacattgaactcatgtagatttaataagtgactaagcca |
112 |
Q |
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| T |
4189927 |
aatattaaggcaaataaatgtttatgcatatgaaacttatggtgtaatgaaatatatttggcacattgaactcatgtagaattaataagtgactaagcca |
4190026 |
T |
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| Q |
113 |
tgtgagctagataagtggaatttaaacttaccaagcctccagtgacaaactggagaagaaaacatgcaacaatggatccaagaagctgagcaatccagta |
212 |
Q |
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| T |
4190027 |
tgtgagctagataagtggaatttaaacttaccaagcctccagtgacaaactggagaagaaaacatgcaacaatggatccaagaagctgagcaatccagta |
4190126 |
T |
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| Q |
213 |
gaagataccagtgaggatggtaatctgtccaccaacagccaatccaaaggtgacagcagggttgacatgaccaccagaaatgttggcaccaactgcaaca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4190127 |
gaagataccagtgaggatggtaatctgtccaccaacagccaatccaaaggtgacagcagggttgacatgaccaccagaaatgttggcaccaactgcaaca |
4190226 |
T |
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| Q |
313 |
gcaacaaaaagtgcaaaaccatggcaaacagcaactgctagtaaccctgctggatcaagagctgcatctgatgtcaa |
389 |
Q |
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| T |
4190227 |
gcaacaaaaagtgcaaaaccatggcaaacagcaactgctagtaaccctgctggatcaagagctgcatctgatgtcaa |
4190303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 135 - 389
Target Start/End: Complemental strand, 43585386 - 43585132
Alignment:
| Q |
135 |
taaacttaccaagcctccagtgacaaactggagaagaaaacatgcaacaatggatccaagaagctgagcaatccagtagaagataccagtgaggatggta |
234 |
Q |
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| T |
43585386 |
taaacataccaagcctcctgtggcatacttgaggagaaagcatgccactatggaaccaagaagttgtgcaatccagtagaagataccagtgaggatagtg |
43585287 |
T |
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| Q |
235 |
atctgtccaccaacagccaatccaaaggtgacagcagggttgacatgaccaccagaaatgttggcaccaactgcaacagcaacaaaaagtgcaaaaccat |
334 |
Q |
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|||||||| |||| |||||| |||||||| ||||| ||||||||||| |||||||| |||||||| ||||| | ||||||||||||||| |||||||||| |
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| T |
43585286 |
atctgtcccccaatagccaacccaaaggtcacagctgggttgacatgtccaccagatatgttggctccaacagaaacagcaacaaaaagagcaaaaccat |
43585187 |
T |
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| Q |
335 |
ggcaaacagcaactgctagtaaccctgctggatcaagagctgcatctgatgtcaa |
389 |
Q |
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| T |
43585186 |
gacaaacagcaactgctactaatccagcaggatcaagagctgcacctgatgtcaa |
43585132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 329
Target Start/End: Complemental strand, 23339534 - 23339461
Alignment:
| Q |
256 |
ccaaaggtgacagcagggttgacatgaccaccagaaatgttggcaccaactgcaacagcaacaaaaagtgcaaa |
329 |
Q |
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| T |
23339534 |
ccaaaagtgacagcagggttgacatgtccaccagaaatgttagcaccaacagagacagcaacaaaaagtgcaaa |
23339461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 52103066 - 52103130
Alignment:
| Q |
256 |
ccaaaggtgacagcagggttgacatgaccaccagaaatgttggcaccaactgcaacagcaacaaa |
320 |
Q |
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| T |
52103066 |
ccaaatgtgactgcagggttcacatgtccaccagaaatgtttgcaccaacagaaacagccacaaa |
52103130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 41418460 - 41418521
Alignment:
| Q |
259 |
aaggtgacagcagggttgacatgaccaccagaaatgttggcaccaactgcaacagcaacaaa |
320 |
Q |
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| T |
41418460 |
aaggtgacagcggggttgacatgtccaccggagatgttagcaccaacggagacagcaacaaa |
41418521 |
T |
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