View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_high_15 (Length: 382)
Name: NF2532_high_15
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 33220479 - 33220850
Alignment:
| Q |
1 |
ccttaatgtgtagttgtatagagatgtagctattttttctgctttgcttgataaatactccttcagtgtatccatttcttagttttgtctctagaaagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33220479 |
ccttaatgtgtagttgtatagagatgtagctattttttctgctttgcttgataaatactcgttcagtgtatccatttcttagttttgtctctagaaagga |
33220578 |
T |
|
| Q |
101 |
aactaaagttggtaatttctcactttaccattatacccttgaaattgttttaccataataaaaacatgaaattggtcagtgatgattatcctgaaacaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33220579 |
aactaaagttggtaatttctcactttaccattatacccttgaaattgttttaccataataaaaacatgaaattggtcagtgatgattatcctgaaacaaa |
33220678 |
T |
|
| Q |
201 |
tgaaaaagaaaagattaggcttgcattggtaagatatagctggcagtgaaataaatataatttggatatatttgctattgtaataaatgcatcatatttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33220679 |
tgaaaaagaaaagattaggcttgcattggtaagatatagctggcagtgaaataaatataatttggatatatttgctattgtaataaatgcatcatatttg |
33220778 |
T |
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| Q |
301 |
gaaaatcaaactaatatgataaggcctaaggtgtttgcagctattgatcgaatctaatcatatgtgtctgtg |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33220779 |
gaaaatcaaactaatatgataaggcctaaggtgtttgcagctattgatcgaatctaatcacatgtgtctgtg |
33220850 |
T |
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