View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_high_21 (Length: 328)
Name: NF2532_high_21
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 75 - 220
Target Start/End: Complemental strand, 27472325 - 27472180
Alignment:
| Q |
75 |
tagcacttgattagaatttcattgataaaaattcagatatcaatttgatatgaaggaaagatccactgttctaaatagctgactacattcctacaagaaa |
174 |
Q |
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| T |
27472325 |
tagcacttgattaaaatttcattgataaaaattcagatatcgatttgatatgaaggaaagatccactgttctaaatagctgactacattcctataagaag |
27472226 |
T |
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| Q |
175 |
gtaccaattgataactatgtttctatgtaataatcaagtaaaagca |
220 |
Q |
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| T |
27472225 |
gtaccaattgataactatgttcctatgtaataatcaagtaaaagca |
27472180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 33079013 - 33079070
Alignment:
| Q |
244 |
gaacatgaatataaaagctccataaataactgctgaacaagagaataatcattcattg |
301 |
Q |
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| T |
33079013 |
gaacatgaatataaaagctccataaataactgctgaacaagagaataatcattcattg |
33079070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 22687703 - 22687921
Alignment:
| Q |
19 |
actatagcaaatgaaattggtaatgttttaacttacctaactggaacaaaataatttagcacttg-attagaatttcattgataaaaattcagatatca- |
116 |
Q |
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| T |
22687703 |
actatagcaaatgaaattaatgatgttttgacttacccaactagaacaatataattttgcacttggattagattttcattgaaaaaaattcagatatcac |
22687802 |
T |
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| Q |
117 |
-----------------atttgatatgaaggaaagatccactgttctaaatagctgactacattcctacaagaaagtaccaattgataactatgtttcta |
199 |
Q |
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| T |
22687803 |
actttcatgtaaaataaaattgatatgaaggaaagatccactgttctaaatagctgactacattcctacaagaaagtaccaattgataactatgtttcta |
22687902 |
T |
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| Q |
200 |
tgtaataatcaagtaaaag |
218 |
Q |
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| T |
22687903 |
tgtaataatcaagtaaaag |
22687921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 220
Target Start/End: Complemental strand, 24263574 - 24263481
Alignment:
| Q |
127 |
aaggaaagatccactgttctaaatagctgactacattcctacaagaaagtaccaattgataactatgtttctatgtaataatcaagtaaaagca |
220 |
Q |
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| T |
24263574 |
aaggaaagatccagtgttctaaatagttagctacatttcttcaagttggtaccaattgataactgtgtttctacatagtaataaagtaaaagca |
24263481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 19859531 - 19859478
Alignment:
| Q |
165 |
ctacaagaaagtaccaattgataactatgtttctatgtaataatcaagtaaaag |
218 |
Q |
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| T |
19859531 |
ctacaagcaggtaccaactgataactatatttctatgcaataatcaagtaaaag |
19859478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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