View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_high_23 (Length: 294)
Name: NF2532_high_23
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 26 - 283
Target Start/End: Complemental strand, 4972854 - 4972597
Alignment:
| Q |
26 |
ccaaaagttttggggtggtcttgacttgcttgctttccatcatgtgaaggatccgaggcagaaggcaacggtgtatgtgactgattttgtttcttattcg |
125 |
Q |
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| T |
4972854 |
ccaaaagttttggggtggtcttgacttgcttgctttccatcatgtgaaggatccgaggcagaaggcaacggtgtatgtgactgattttgtttcttattcg |
4972755 |
T |
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| Q |
126 |
catctggaacagctggaaaagatccactactaatgctaattggaaggttactgaaatctgttttaggtccaccactataaggtgcggctggaaggttatt |
225 |
Q |
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| T |
4972754 |
catctggaacagctggaaaagatccactactaatgctaattggaaggttactgaaatctgttttaggtccaccactataaggtgcggctggaaggttatt |
4972655 |
T |
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| Q |
226 |
cgattgatcgagtaacttacgatgcgcataattgattagatttggcatgttcatctca |
283 |
Q |
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| T |
4972654 |
cgattgatcgagtaacttacgacgcgcataattgattagatttggcatgttcatctca |
4972597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 26 - 283
Target Start/End: Complemental strand, 4990762 - 4990505
Alignment:
| Q |
26 |
ccaaaagttttggggtggtcttgacttgcttgctttccatcatgtgaaggatccgaggcagaaggcaacggtgtatgtgactgattttgtttcttattcg |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4990762 |
ccaaaagttttggggtggtcttgacttgcttgctttccatcatgtgaaggatccgaggcagaaggcaacggtgtatgtgactgattttgtttcttattcg |
4990663 |
T |
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| Q |
126 |
catctggaacagctggaaaagatccactactaatgctaattggaaggttactgaaatctgttttaggtccaccactataaggtgcggctggaaggttatt |
225 |
Q |
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| T |
4990662 |
catctggaacagctggaaaagatccactactaatgctaattggaaggttactgaaatctgttttaggtccaccactataaggtgcggctggaaggttatt |
4990563 |
T |
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| Q |
226 |
cgattgatcgagtaacttacgatgcgcataattgattagatttggcatgttcatctca |
283 |
Q |
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| T |
4990562 |
cgattgatcgagtaacttacgacgcgcataattgattagatttggcatgttcatctca |
4990505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 107 - 269
Target Start/End: Original strand, 35833262 - 35833424
Alignment:
| Q |
107 |
tgattttgtttcttattcgcatctggaacagctggaaaagatccactactaatgctaattggaaggttactgaaatctgttttaggtccaccactataag |
206 |
Q |
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||||||||||||||||| |||||||| ||||| || |||||||||||||| || |||||||| ||||| | | | |||||||||| ||||||| |
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| T |
35833262 |
tgattttgtttcttattggcatctggcacagccgggaaagatccactacttattgaaattggaataacactgatctgtatagtaggtccaccgctataag |
35833361 |
T |
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| Q |
207 |
gtgcggctggaaggttattcgattgatcgagtaacttacgatgcgcataattgattagatttg |
269 |
Q |
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|||| |||| ||||||||| || ||||| || ||||||||| | ||| || |||||||||||| |
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| T |
35833362 |
gtgcagctgcaaggttattggactgatcaagcaacttacgacgtgcagaactgattagatttg |
35833424 |
T |
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