View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_high_35 (Length: 244)
Name: NF2532_high_35
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 26032801 - 26033028
Alignment:
| Q |
1 |
ctagcatcgtcattgtctaatgaactgttgtgtaaccaaaaatctggatccataaagtcaccatgatactgagtctccataggtggtggaaggtatgaac |
100 |
Q |
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| T |
26032801 |
ctagcatcgtcattgtctaatgaactgttgtgtaaccaaaaatctggatccataaagtcaccatgatactgagtctccataggtggtggaaggtatgaac |
26032900 |
T |
|
| Q |
101 |
atgttgcgggtggagccattggtatatgagaagttccaataatgctacccctgaaattaatgaaagtaactgtaaatttaacacctcatatcaacaattt |
200 |
Q |
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||| || |||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||||| |
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| T |
26032901 |
atggtgggggtggagccataggtatataagaagttccaataatgcttcccctgaaattaatgaaagtaacagtaaatttaacacctcgtataaacaattt |
26033000 |
T |
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| Q |
201 |
taacatataaaataaaatggaattacat |
228 |
Q |
| |
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|||||||||||| ||||||||||||||| |
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| T |
26033001 |
taacatataaaagaaaatggaattacat |
26033028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 86 - 228
Target Start/End: Complemental strand, 38456717 - 38456565
Alignment:
| Q |
86 |
gtggaaggtatgaacatgttgcgggtggagccattggtatatga------gaagttccaataatgct---acccctgaaattaatgaaagtaactgtaaa |
176 |
Q |
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|||||||||||||||||| || |||| |||| || ||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
38456717 |
gtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctacccctgaaattgatgaaagtaactgtaaa |
38456618 |
T |
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| Q |
177 |
tttaacac-ctcatatcaacaattttaacatataaaataaaatggaattacat |
228 |
Q |
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| T |
38456617 |
tttaacacactcatataaacaattttaacatataaaagaaaatggaattacat |
38456565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 86 - 228
Target Start/End: Complemental strand, 38181356 - 38181205
Alignment:
| Q |
86 |
gtggaaggtatgaacatgttgcgggtggagccattggtatatga------gaagttccaataatgctac---ccctgaaattaatgaaagtaactgtaaa |
176 |
Q |
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|||||||||||||||||| || |||| |||| || ||||||||| ||||||||||||||||| | |||||||||| ||||||||||||||||| |
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| T |
38181356 |
gtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatgaaagtaactgtaaa |
38181257 |
T |
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| Q |
177 |
tttaacacctcatatcaacaattttaacatataaaataaaatggaattacat |
228 |
Q |
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| T |
38181256 |
tataacacctcatataaacaattttaacatataaaagaaaatggaattacat |
38181205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 86 - 228
Target Start/End: Original strand, 38189775 - 38189926
Alignment:
| Q |
86 |
gtggaaggtatgaacatgttgcgggtggagccattggtatatga------gaagttccaataatgctac---ccctgaaattaatgaaagtaactgtaaa |
176 |
Q |
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|||||||||||||||||| || |||| |||| || ||||||||| ||||||||||||||||| | |||||||||| ||||||||||||||||| |
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| T |
38189775 |
gtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatgaaagtaactgtaaa |
38189874 |
T |
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| Q |
177 |
tttaacacctcatatcaacaattttaacatataaaataaaatggaattacat |
228 |
Q |
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|
| T |
38189875 |
tataacacctcatataaacaattttaacatataaaagaaaatggaattacat |
38189926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 86 - 228
Target Start/End: Complemental strand, 38208580 - 38208429
Alignment:
| Q |
86 |
gtggaaggtatgaacatgttgcgggtggagccattggtatatga------gaagttccaataatgctac---ccctgaaattaatgaaagtaactgtaaa |
176 |
Q |
| |
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|||||||||||||||||| || |||| |||| || ||||||||| ||||||||||||||||| | |||||||||| ||||||||||||||||| |
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| T |
38208580 |
gtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatgaaagtaactgtaaa |
38208481 |
T |
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| Q |
177 |
tttaacacctcatatcaacaattttaacatataaaataaaatggaattacat |
228 |
Q |
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| ||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
38208480 |
tataacacctcatataaacaattttaacatataaaagaaaatggaattacat |
38208429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 86 - 228
Target Start/End: Original strand, 38217000 - 38217151
Alignment:
| Q |
86 |
gtggaaggtatgaacatgttgcgggtggagccattggtatatga------gaagttccaataatgctac---ccctgaaattaatgaaagtaactgtaaa |
176 |
Q |
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|||||||||||||||||| || |||| |||| || ||||||||| ||||||||||||||||| | |||||||||| ||||||||||||||||| |
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| T |
38217000 |
gtggaaggtatgaacatggtgagggtagagctataggtatatgaatatgagaagttccaataatgctgctaaccctgaaattgatgaaagtaactgtaaa |
38217099 |
T |
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| Q |
177 |
tttaacacctcatatcaacaattttaacatataaaataaaatggaattacat |
228 |
Q |
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| T |
38217100 |
tataacacctcatataaacaattttaacatataaaagaaaatggaattacat |
38217151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 6067645 - 6067699
Alignment:
| Q |
86 |
gtggaaggtatgaacatgttgcgggtggagccattggtatatgagaagttccaat |
140 |
Q |
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|||||||||||||||||| || ||||||| |||| |||||||||||||||||||| |
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| T |
6067645 |
gtggaaggtatgaacatggtgggggtggatccataggtatatgagaagttccaat |
6067699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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