View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2532_high_44 (Length: 216)

Name: NF2532_high_44
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2532_high_44
NF2532_high_44
[»] chr7 (1 HSPs)
chr7 (1-216)||(41658248-41658463)
[»] chr3 (2 HSPs)
chr3 (1-216)||(14628551-14628767)
chr3 (1-216)||(14644356-14644572)


Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 41658463 - 41658248
Alignment:
Q  1 tcttcattgactatcatttttgcagggatcaagcactagaatatatgaaatatgctgaagcttttattagaaaattgctaaaagtgcttcttaagaaact 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  41658463 tcttgattgactatcatttttgcagggatcaagcactagaatatatgaaatatgctgaagcttttattagaaaattgctaaaagtgcttcttaagaaatt 41658364  T
Q  101 gaatgtgaaggagttaggcnnnnnnngagaacacgccttaatggatacgatgtcattaggctttgtttactacccagcttgtcctgaacctgaactagta 200  Q
    |||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41658363 gaatgtgaaggagttaggcagagaaagagaacacgccttaatggatacgatgtcattaggctttgtttactacccagcttgtcctgcacctgaactagta 41658264  T
Q  201 tcaggagtaagtcctc 216  Q
    ||||||||||||||||    
T  41658263 tcaggagtaagtcctc 41658248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 14628767 - 14628551
Alignment:
Q  1 tcttcattgactatcattttt-gcagggatcaagcactagaatatatgaaatatgctgaagcttttattagaaaattgctaaaagtgcttcttaagaaac 99  Q
    |||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  14628767 tcttgattgactatctttttttgcaggaatcaagcactagaatatatgaaatatgctgacgcttttattagaaagttgctaaaagtgcttcttaagaaac 14628668  T
Q  100 tgaatgtgaaggagttaggcnnnnnnngagaacacgccttaatggatacgatgtcattaggctttgtttactacccagcttgtcctgaacctgaactagt 199  Q
    |||||||||||||||||| |       ||||| |||| ||||||| | | |||  |||||||||   ||||||||| |||||||||||||||||||| ||    
T  14628667 tgaatgtgaaggagttagacaaagaaagagaatacgcgttaatgggtgcaatgatattaggcttcaattactaccctgcttgtcctgaacctgaacttgt 14628568  T
Q  200 atcaggagtaagtcctc 216  Q
    |||||||||| ||||||    
T  14628567 atcaggagtaggtcctc 14628551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 14644572 - 14644356
Alignment:
Q  1 tcttcattgactatcattttt-gcagggatcaagcactagaatatatgaaatatgctgaagcttttattagaaaattgctaaaagtgcttcttaagaaac 99  Q
    |||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  14644572 tcttgattgactatctttttttgcaggaatcaagcactagaatatatgaaatatgctgacgcttttattagaaaattgctacaagtgcttcttaagaaac 14644473  T
Q  100 tgaatgtgaaggagttaggcnnnnnnngagaacacgccttaatggatacgatgtcattaggctttgtttactacccagcttgtcctgaacctgaactagt 199  Q
    |||||||||| ||||||| |       |||||||||| ||||||| | | |||  |||||||||   ||||||||| |||||||||||||||||||| ||    
T  14644472 tgaatgtgaacgagttagacaaagaaagagaacacgctttaatgggtgcaatgatattaggcttcaattactaccctgcttgtcctgaacctgaacttgt 14644373  T
Q  200 atcaggagtaagtcctc 216  Q
    |||||||||| ||||||    
T  14644372 atcaggagtaggtcctc 14644356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University