View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2532_high_9 (Length: 437)

Name: NF2532_high_9
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2532_high_9
NF2532_high_9
[»] chr2 (6 HSPs)
chr2 (235-389)||(11956877-11957031)
chr2 (228-314)||(7133996-7134082)
chr2 (236-331)||(7128563-7128659)
chr2 (229-387)||(7125175-7125340)
chr2 (15-83)||(21189810-21189878)
chr2 (348-385)||(7134081-7134118)
[»] chr1 (4 HSPs)
chr1 (114-225)||(30747186-30747297)
chr1 (114-225)||(30768637-30768748)
chr1 (15-83)||(30747359-30747427)
chr1 (15-83)||(30768810-30768878)
[»] chr5 (3 HSPs)
chr5 (89-180)||(40567999-40568090)
chr5 (16-83)||(40568128-40568195)
chr5 (228-297)||(10062154-10062221)
[»] chr3 (1 HSPs)
chr3 (15-83)||(36466850-36466918)
[»] chr7 (1 HSPs)
chr7 (328-387)||(738783-738842)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 235 - 389
Target Start/End: Original strand, 11956877 - 11957031
Alignment:
Q  235 ggacatacttgatcaatgtttcagcgaccttagcaggaagagcaaccacaaatttgctctttgttccttgagttacgaaaggagataaaagtgcattgag 334  Q
    ||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||| | |||||||| ||| |||||||| |||||||||||    
T  11956877 ggacatacttgatcagtgtttcagtgaccttagcaggacgagcaaccacaaatttgctctttgtcctttgagttaagaatggagataacagtgcattgag 11956976  T
Q  335 ttcataataccacaaaggaacattgacgaaaatctacaatgaaacaaacacaaca 389  Q
      |||| ||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  11956977 agcatagtaccagaaaggaacattgatgaaaatctacaatgaaacaaacacaaca 11957031  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 228 - 314
Target Start/End: Original strand, 7133996 - 7134082
Alignment:
Q  228 attttgaggacatacttgatcaatgtttcagcgaccttagcaggaagagcaaccacaaatttgctctttgttccttgagttacgaaa 314  Q
    |||||||||||| | |||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||| |||||||| ||||    
T  7133996 attttgaggacacatttgatcaatgtttcagtgaccttagcaggacgagcagccacaaatttgctctttgttctttgagttaagaaa 7134082  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 236 - 331
Target Start/End: Original strand, 7128563 - 7128659
Alignment:
Q  236 gacatacttgatcaatgtttcagcgaccttagcaggaagagcaaccacaaatttgctctttgttccttgagt-tacgaaaggagataaaagtgcatt 331  Q
    ||||| ||||||||||||||||| |||||||||||||  ||||||| |||||| ||||||||||| |||||| || |||||| ||||||||||||||    
T  7128563 gacatgcttgatcaatgtttcagagaccttagcaggactagcaaccgcaaattcgctctttgttctttgagtataagaaaggtgataaaagtgcatt 7128659  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 229 - 387
Target Start/End: Original strand, 7125175 - 7125340
Alignment:
Q  229 ttttgaggacatacttgatcaatgtttcagcgaccttagcaggaagagcaaccacaaatttgctctttgttccttgagttacgaaagg---agataaaag 325  Q
    ||||||||||||||||||||||||||| || | ||| ||||||| |||||||| ||| |||||||||||||| ||||||      |||   | |||||||    
T  7125175 ttttgaggacatacttgatcaatgtttgagtgtcctcagcaggacgagcaaccgcaactttgctctttgttctttgagtgctttgaggcataaataaaag 7125274  T
Q  326 tg----cattgagttcataataccacaaaggaacattgacgaaaatctacaatgaaacaaacacaa 387  Q
    ||    |||||||| ||||||| || ||||||||||||| |||| |||| ||||||||||||||||    
T  7125275 tgcattcattgagtgcataatatcagaaaggaacattgatgaaagtctaaaatgaaacaaacacaa 7125340  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 21189878 - 21189810
Alignment:
Q  15 actcaattcagaattcactactgcaaaaatgatttttctcccgaagactcaatatatatcatgtcaaag 83  Q
    ||||||||||||||||||| ||||||||||||||||||||  |||||||  ||||||||||||||||||    
T  21189878 actcaattcagaattcactgctgcaaaaatgatttttctcttgaagacttgatatatatcatgtcaaag 21189810  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 385
Target Start/End: Original strand, 7134081 - 7134118
Alignment:
Q  348 aaaggaacattgacgaaaatctacaatgaaacaaacac 385  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  7134081 aaaggaacattgatgaaaatctacaatgaaacaaacac 7134118  T

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Target: chr1 (Bit Score: 84; Significance: 9e-40; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 114 - 225
Target Start/End: Complemental strand, 30747297 - 30747186
Alignment:
Q  114 ttttttaaaacaacacctactctgaaaacataccagagactataatggctatacataaaatttgtacattaattgttacctccaattcaggaatctctac 213  Q
    |||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||    
T  30747297 tttttttaaacaacacctactcttaaaacataccagagattataatggctatacataaaatttgtacattaattgttacctccaatgcagaactctctac 30747198  T
Q  214 atttgtagatga 225  Q
    ||||| ||||||    
T  30747197 atttgcagatga 30747186  T

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Target: chr1; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 114 - 225
Target Start/End: Complemental strand, 30768748 - 30768637
Alignment:
Q  114 ttttttaaaacaacacctactctgaaaacataccagagactataatggctatacataaaatttgtacattaattgttacctccaattcaggaatctctac 213  Q
    |||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||    
T  30768748 tttttttaaacaacacctactcttaaaacataccagagattataatggctatacataaaatttgtacattaattgttacctccaatgcagaactctctac 30768649  T
Q  214 atttgtagatga 225  Q
    ||||| ||||||    
T  30768648 atttgcagatga 30768637  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 30747427 - 30747359
Alignment:
Q  15 actcaattcagaattcactactgcaaaaatgatttttctcccgaagactcaatatatatcatgtcaaag 83  Q
    ||||||||||||||| ||| ||||||||||||||||||||  |||||||| |||||| |||||| ||||    
T  30747427 actcaattcagaatttactgctgcaaaaatgatttttctcttgaagactcgatatatgtcatgttaaag 30747359  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 30768878 - 30768810
Alignment:
Q  15 actcaattcagaattcactactgcaaaaatgatttttctcccgaagactcaatatatatcatgtcaaag 83  Q
    ||||||||||||||| ||| ||||||||||||||||||||  |||||||| |||||| |||||| ||||    
T  30768878 actcaattcagaatttactgctgcaaaaatgatttttctcttgaagactcgatatatgtcatgttaaag 30768810  T

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Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 89 - 180
Target Start/End: Complemental strand, 40568090 - 40567999
Alignment:
Q  89 aaatgtgaatcctactaacatgcagttttttaaaacaacacctactctgaaaacataccagagactataatggctatacataaaatttgtac 180  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||    
T  40568090 aaatgtgaatcctactaacatgcagtttttaaaaacaacacctactcttaaaacatactagagactataatggctatacatgaaatttgtac 40567999  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 40568195 - 40568128
Alignment:
Q  16 ctcaattcagaattcactactgcaaaaatgatttttctcccgaagactcaatatatatcatgtcaaag 83  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40568195 ctcaattcagaattcactgctgcaaaaatgatttttctcccgaagactcaatatatatcatgtcaaag 40568128  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 297
Target Start/End: Complemental strand, 10062221 - 10062154
Alignment:
Q  228 attttgaggacatacttgatcaatgtttcagcgaccttagcaggaagagcaaccacaaatttgctctttg 297  Q
    ||||||||||||||  ||||||| ||||||   | |||||||||| ||||||||||||||||||| ||||    
T  10062221 attttgaggacata--tgatcaaggtttcaataaacttagcaggacgagcaaccacaaatttgctttttg 10062154  T

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Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 36466850 - 36466918
Alignment:
Q  15 actcaattcagaattcactactgcaaaaatgatttttctcccgaagactcaatatatatcatgtcaaag 83  Q
    ||||||||||||||||||| ||||||||||||||||||||  |||||||| |||||| |||||||||||    
T  36466850 actcaattcagaattcactgctgcaaaaatgatttttctcttgaagactcgatatatgtcatgtcaaag 36466918  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 387
Target Start/End: Complemental strand, 738842 - 738783
Alignment:
Q  328 cattgagttcataataccacaaaggaacattgacgaaaatctacaatgaaacaaacacaa 387  Q
    |||||||| |||||||||| ||||||||||||| |||| |||| |||||||  |||||||    
T  738842 cattgagtgcataataccagaaaggaacattgatgaaagtctaaaatgaaaataacacaa 738783  T

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