View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_low_1 (Length: 706)
Name: NF2532_low_1
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-172; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 257 - 579
Target Start/End: Complemental strand, 14252401 - 14252079
Alignment:
| Q |
257 |
aactgcattgagttatattagagtttctaaaatatccaagatagtttcacttgaacagaattggaactttaggtagaaatgttattttgaataagttgtt |
356 |
Q |
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| T |
14252401 |
aactgcattgagttatattagagtttctaaaatatccaagatagtttcacttgaacagaattggaactttaggtagaaatgttattttgaataagttgtt |
14252302 |
T |
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| Q |
357 |
acaaggatgataactttgaaattacttgtgaacattttaatgttattttgtcttgtattttatattatatatgctttaagtgtacattctttaattgtgt |
456 |
Q |
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| T |
14252301 |
acatggatgataacttcgaaattacttgtgaacattttaatgttattttgtcttgtattttatattatatatgctttaagtgtacattctttaattgtgt |
14252202 |
T |
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| Q |
457 |
cttgtagatttccgttgatgccatcgactgctgacttgcaatccatctcgatagtaatccgttggacacctagttcttgcaaccaaataatagtctccaa |
556 |
Q |
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| T |
14252201 |
cttgtagatttccgttgatgccatcgactgctgacttgcaatccatctcgatagtaatccgttggacacctagctcttgcaaccaaataatagcctccaa |
14252102 |
T |
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| Q |
557 |
aagaccatacatctcagcctctt |
579 |
Q |
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| T |
14252101 |
aagaccatacatctcagcctctt |
14252079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 14252930 - 14252700
Alignment:
| Q |
11 |
agaacctgtgaaattgatctatagctgttctatatgatgatcagttctacaatgatattgatcttgatgagtttgaggcacaagcaacttcgattttaaa |
110 |
Q |
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| T |
14252930 |
agaatctgtgaaattgatctatagctgttctatatgatgatcagttctataatgatattgatcttgatgagttcgaggcacaagcaacttcgattttaaa |
14252831 |
T |
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| Q |
111 |
gcataatatatatttatcaattcaatagctagatacaaacccttaatctcatgaactgaaccatgatgttagtatgtttccttcattcgactttggtata |
210 |
Q |
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| T |
14252830 |
gcataatatatatttatcaattcaatagctagatacaaacccttaatctcatgaactgaaccatgatgttagtatgtttccttcattcgactttggtata |
14252731 |
T |
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| Q |
211 |
tgataagcaagacaatcactcaagcggctga |
241 |
Q |
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| T |
14252730 |
tgataagcaagacaatcactcaagtggctga |
14252700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 610 - 675
Target Start/End: Complemental strand, 14252082 - 14252017
Alignment:
| Q |
610 |
tcttaactccaacaagttatcctctatcatttctcaaacagattcctattttgaattttccttgtt |
675 |
Q |
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| T |
14252082 |
tcttagctccaacatattatcctctatcatttctcaaacagattcctatttcgaattttccttgtt |
14252017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 29 - 219
Target Start/End: Complemental strand, 46714228 - 46714038
Alignment:
| Q |
29 |
ctatagctgttctatatgatgatcagttctacaatgatattgatcttgatgagtttgaggcacaagcaacttcgattttaaagcataatatatatttatc |
128 |
Q |
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|||||| || ||||| |||||||| || || ||||||||||||||||||||||| ||||| ||||||||||||||| |||| | || || || || |
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| T |
46714228 |
ctatagatggtctatgcgatgatcaattttataatgatattgatcttgatgagttggaggcgcaagcaacttcgattctaaaacggaaattagatccttc |
46714129 |
T |
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| Q |
129 |
aattcaatagctagatacaaacccttaatctcatgaactgaaccatgatgttagtatgtttccttcattcgactttggtatatgataagca |
219 |
Q |
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| T |
46714128 |
gattcaaaagcaagatacaaaccctcaatctcatgagccgaacctggatgttattatgtctccatcctttgaccttggtatatgataagca |
46714038 |
T |
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