View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2532_low_11 (Length: 430)

Name: NF2532_low_11
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2532_low_11
NF2532_low_11
[»] chr4 (11 HSPs)
chr4 (1-353)||(43086527-43086877)
chr4 (43-126)||(53855532-53855611)
chr4 (47-136)||(1146035-1146120)
chr4 (46-131)||(1180895-1180976)
chr4 (13-126)||(1615054-1615163)
chr4 (79-131)||(37551660-37551712)
chr4 (88-136)||(41813852-41813900)
chr4 (1-72)||(27654793-27654864)
chr4 (81-131)||(9746428-9746478)
chr4 (46-131)||(34925336-34925417)
chr4 (43-75)||(56499658-56499690)
[»] chr7 (6 HSPs)
chr7 (1-134)||(48981372-48981501)
chr7 (1-134)||(3178051-3178180)
chr7 (13-131)||(8965896-8966010)
chr7 (13-126)||(26803430-26803540)
chr7 (13-131)||(46563119-46563233)
chr7 (43-71)||(22786043-22786071)
[»] chr5 (6 HSPs)
chr5 (13-131)||(11413520-11413634)
chr5 (13-131)||(21157748-21157862)
chr5 (13-131)||(21150607-21150721)
chr5 (13-131)||(18676404-18676519)
chr5 (81-134)||(34840236-34840289)
chr5 (13-140)||(18392952-18393075)
[»] chr3 (5 HSPs)
chr3 (13-131)||(2642835-2642949)
chr3 (13-131)||(23771420-23771534)
chr3 (13-131)||(7678142-7678257)
chr3 (81-131)||(53055686-53055736)
chr3 (43-104)||(26748516-26748572)
[»] chr2 (6 HSPs)
chr2 (13-126)||(37077303-37077412)
chr2 (13-130)||(45065205-45065318)
chr2 (13-126)||(37660870-37660979)
chr2 (13-72)||(7529755-7529814)
chr2 (81-131)||(38148032-38148082)
chr2 (87-134)||(30545486-30545534)
[»] scaffold0036 (1 HSPs)
scaffold0036 (13-131)||(23269-23384)
[»] scaffold0006 (1 HSPs)
scaffold0006 (13-131)||(96055-96169)
[»] chr8 (5 HSPs)
chr8 (13-131)||(11163399-11163513)
chr8 (13-137)||(9301530-9301650)
chr8 (44-131)||(8954692-8954775)
chr8 (43-71)||(27193102-27193130)
chr8 (43-71)||(29126065-29126093)
[»] chr6 (2 HSPs)
chr6 (13-131)||(19812089-19812203)
chr6 (1-71)||(15432792-15432862)
[»] chr1 (3 HSPs)
chr1 (13-126)||(50152566-50152675)
chr1 (43-126)||(11248944-11249023)
chr1 (43-71)||(45230681-45230709)
[»] scaffold0003 (1 HSPs)
scaffold0003 (13-131)||(252727-252841)
[»] scaffold0236 (1 HSPs)
scaffold0236 (13-131)||(14244-14358)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-75)||(369524-369598)


Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 43086527 - 43086877
Alignment:
Q  1 atgaaaagaaacattaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgta 100  Q
    ||||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||| |||||||||    ||| ||||||| |||||||||    
T  43086527 atgaaaagaaatattaaatgatgaaggttattataggaaaaagataaattgttgtatcaaaagtaataaaatgta----atttttatcttaatttgtgta 43086622  T
Q  101 aaaaactcaaaagtgataattaaaaaagaacagatg-agtagaaatttcatattgattagaaagattcaacattttataagttagatgaacaaactgaat 199  Q
    |||||||||||||||| ||||||||| ||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  43086623 aaaaactcaaaagtgacaattaaaaaggaacagatggagtataagtttcatattgattagaaagattcaacattttataagttagatgaacaaactcaat 43086722  T
Q  200 ttaatggatatctaagtccatgcaaaatagttaagacct--aaaaaatttgtgaaaattcgaggcattattggtgatactttctatgctttatcatttcc 297  Q
    ||||||||||||||||||||| |||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43086723 ttaatggatatctaagtccat-caaaatagttaagacctctaaaaaatttatgaaaattcgaggcattattggtgatactttctatgctttatcatttcc 43086821  T
Q  298 gcaattatattgttgttccttataattttgaatttgatgaaattcatttgtttact 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43086822 gcaattatattgttgttccttataattttgaatttgatgaaattcatttgtttact 43086877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 53855532 - 53855611
Alignment:
Q  43 gataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaagtgataattaaaaa 126  Q
    |||||||||||||||||||| | ||||||| || |    |||| |||||||||||| |||||||||||||||||||||||||||    
T  53855532 gataaattgttgtatcaaaaattgtaaaatatatt----tgttgtcttgatttgtggaaaaaactcaaaagtgataattaaaaa 53855611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 136
Target Start/End: Complemental strand, 1146120 - 1146035
Alignment:
Q  47 aattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaagtgataattaaaaaagaacagatg 136  Q
    |||||||| |||||||||||||||| ||| | |    |||||||| |||||||||||||||||||||||| ||||||||| |||| ||||    
T  1146120 aattgttgcatcaaaagtagtaaaaagtattta----ttatcttggtttgtgtaaaaaactcaaaagtgacaattaaaaaggaacggatg 1146035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 1180976 - 1180895
Alignment:
Q  46 aaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaagtgataattaaaaaagaac 131  Q
    ||||||||||||||||||||||||||||    || ||||| ||||| ||||||||||||||  |||||||| ||||||||| ||||    
T  1180976 aaattgttgtatcaaaagtagtaaaatg----catttgttgtcttggtttgtgtaaaaaacctaaaagtgacaattaaaaaggaac 1180895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 1615163 - 1615054
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaa 112  Q
    ||||||||||||||||||||||         || || ||||| |||||||||||||||| ||    | ||||| ||||| ||||||||||||||||||||    
T  1615163 attaaatgatgaaggttattataggaaaaatatgaactgttgcatcaaaagtagtaaaaagt----atttgttgtcttggtttgtgtaaaaaactcaaaa 1615068  T
Q  113 gtgataattaaaaa 126  Q
    |||| |||||||||    
T  1615067 gtgacaattaaaaa 1615054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 131
Target Start/End: Complemental strand, 37551712 - 37551660
Alignment:
Q  79 aattgttatcttgatttgtgtaaaaaactcaaaagtgataattaaaaaagaac 131  Q
    ||||||| ||||| |||||||||||||||||||||||| ||||||||| ||||    
T  37551712 aattgttgtcttggtttgtgtaaaaaactcaaaagtgacaattaaaaaggaac 37551660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 41813852 - 41813900
Alignment:
Q  88 cttgatttgtgtaaaaaactcaaaagtgataattaaaaaagaacagatg 136  Q
    |||| |||||||||||||||||||||||| ||||||||| |||| ||||    
T  41813852 cttggtttgtgtaaaaaactcaaaagtgacaattaaaaaggaacggatg 41813900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 27654864 - 27654793
Alignment:
Q  1 atgaaaagaaacattaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaat 72  Q
    |||||| |||| ||||||||||||| | ||||||        ||||||||||||||||||||||||||||||    
T  27654864 atgaaatgaaatattaaatgatgaaagctattatagaaaaatgataaattgttgtatcaaaagtagtaaaat 27654793  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 9746428 - 9746478
Alignment:
Q  81 ttgttatcttgatttgtgtaaaaaactcaaaagtgataattaaaaaagaac 131  Q
    ||||| ||||| ||||||||||||| |||||||||| ||||||||| ||||    
T  9746428 ttgttgtcttggtttgtgtaaaaaattcaaaagtgacaattaaaaaggaac 9746478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 34925417 - 34925336
Alignment:
Q  46 aaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaagtgataattaaaaaagaac 131  Q
    ||||||||||||||||| || |||||||    || ||||| ||||||||| | ||||||| | |||||| ||||||||||| ||||    
T  34925417 aaattgttgtatcaaaaataataaaatg----catttgttgtcttgatttatataaaaaatttaaaagtaataattaaaaatgaac 34925336  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 56499690 - 56499658
Alignment:
Q  43 gataaattgttgtatcaaaagtagtaaaatgta 75  Q
    |||||||||||||||||||| ||||||||||||    
T  56499690 gataaattgttgtatcaaaaatagtaaaatgta 56499658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 48981501 - 48981372
Alignment:
Q  1 atgaaaagaaacattaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgta 100  Q
    ||||||| ||| ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    |||||| ||||| |||||||     
T  48981501 atgaaaaaaaatattaaatgatgaaggttattataggaaaaagataaattgttgtatcaaaagtagtaaaatgta----attgttgtcttggtttgtgtc 48981406  T
Q  101 aaaaactcaaaagtgataattaaaaaagaacaga 134  Q
    |||||||||||||||| ||||||||| |||||||    
T  48981405 aaaaactcaaaagtgacaattaaaaaggaacaga 48981372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 3178051 - 3178180
Alignment:
Q  1 atgaaaagaaacattaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgta 100  Q
    ||||||||| | ||||||||| ||||||||||||        ||||||||||||||||||||||||||||||||    ||||||| ||||| |||||||     
T  3178051 atgaaaagatatattaaatgacgaaggttattatagaaaaaagataaattgttgtatcaaaagtagtaaaatgt----aattgttgtcttggtttgtgtc 3178146  T
Q  101 aaaaactcaaaagtgataattaaaaaagaacaga 134  Q
    |||||   |||||||| ||||||||| |||||||    
T  3178147 aaaaatctaaaagtgacaattaaaaaggaacaga 3178180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 8966010 - 8965896
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaa 112  Q
    ||||||||||||||||||||||        ||| ||||||||||||||||||||||||| ||    | ||||| ||||| |||| |||||||||||||||    
T  8966010 attaaatgatgaaggttattataggaaaaagatgaattgttgtatcaaaagtagtaaaaagt----atttgttgtcttggtttgcgtaaaaaactcaaaa 8965915  T
Q  113 gtgataattaaaaaagaac 131  Q
    |||| ||||||||| ||||    
T  8965914 gtgacaattaaaaaggaac 8965896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 26803540 - 26803430
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgt-aaaaaactcaaa 111  Q
    ||||||||||||||||||||||        ||| ||||||||||||||||||||||||| ||    | ||||| ||||| ||||||| ||||||| ||||    
T  26803540 attaaatgatgaaggttattatagggaaaagatgaattgttgtatcaaaagtagtaaaaagt----atttgttgtcttggtttgtgtaaaaaaacccaaa 26803445  T
Q  112 agtgataattaaaaa 126  Q
    ||||| |||||||||    
T  26803444 agtgacaattaaaaa 26803430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 46563233 - 46563119
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaa 112  Q
    ||||||||| ||||||||||||        || |||||||| |||||||||||||||||||    || ||||| |||||  |||||||||||||  ||||    
T  46563233 attaaatgaggaaggttattataggaaaaagaaaaattgttatatcaaaagtagtaaaatg----catttgttgtcttgtattgtgtaaaaaacataaaa 46563138  T
Q  113 gtgataattaaaaaagaac 131  Q
    |||| ||||||||| ||||    
T  46563137 gtgacaattaaaaatgaac 46563119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 71
Target Start/End: Original strand, 22786043 - 22786071
Alignment:
Q  43 gataaattgttgtatcaaaagtagtaaaa 71  Q
    |||||||||||||||||||||||||||||    
T  22786043 gataaattgttgtatcaaaagtagtaaaa 22786071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 11413634 - 11413520
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaa 112  Q
    ||||||||||||||||||||||        ||| ||||||||||||||||||||||||| ||    | ||||| ||||| ||||||||||||||||||||    
T  11413634 attaaatgatgaaggttattataggaaaaagatgaattgttgtatcaaaagtagtaaaaagt----atttgttgtcttggtttgtgtaaaaaactcaaaa 11413539  T
Q  113 gtgataattaaaaaagaac 131  Q
     ||||||||||||| ||||    
T  11413538 atgataattaaaaaggaac 11413520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 21157748 - 21157862
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaa 112  Q
    ||||||||||||||||| ||||        ||| ||||||||||||||||||||||||||||| |    |||| ||||| ||||||||||||||||||||    
T  21157748 attaaatgatgaaggtttttatagaaaaaagatgaattgttgtatcaaaagtagtaaaatgtatt----tgttgtcttggtttgtgtaaaaaactcaaaa 21157843  T
Q  113 gtgataattaaaaaagaac 131  Q
    |||| ||||||||| ||||    
T  21157844 gtgacaattaaaaaggaac 21157862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 21150607 - 21150721
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaa 112  Q
    ||||||||||||||||| ||||        ||| ||||||||||||||||||||||||||||| |    |||| ||||| ||||||||||||||||||||    
T  21150607 attaaatgatgaaggtttttatagaaaaaagatgaattgttgtatcaaaagtagtaaaatgtatt----tgttgtcttggtttgtgtaaaaaactcaaaa 21150702  T
Q  113 gtgataattaaaaaagaac 131  Q
    |||| | ||||||| ||||    
T  21150703 gtgacagttaaaaaggaac 21150721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 18676519 - 18676404
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgt-aaaaaactcaaa 111  Q
    ||||||||||||||||||||||        ||| ||||||||||||||||||||||||| ||    | ||||| ||||||||||||| |||||| |||||    
T  18676519 attaaatgatgaaggttattataggaaaaagatgaattgttgtatcaaaagtagtaaaaagt----atttgttgtcttgatttgtgtaaaaaaattcaaa 18676424  T
Q  112 agtgataattaaaaaagaac 131  Q
    ||||| ||||||||| ||||    
T  18676423 agtgacaattaaaaaggaac 18676404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 34840289 - 34840236
Alignment:
Q  81 ttgttatcttgatttgtgtaaaaaactcaaaagtgataattaaaaaagaacaga 134  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||||||||||||    
T  34840289 ttgttgtcttgatttgtgtaaaaaacttaaaagtgacaattaaaaaagaacaga 34840236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 18393075 - 18392952
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaa 112  Q
    ||||||||||||||||||||||        ||| |||||||| |||||||||||||||| ||    | ||||| ||||| ||| |||||||| |||||||    
T  18393075 attaaatgatgaaggttattataggaaaaagatgaattgttgcatcaaaagtagtaaaaagt----atttgttgtcttggtttatgtaaaaatctcaaaa 18392980  T
Q  113 gtgataattaaaaaagaacagatgagta 140  Q
    |||| ||||||||| |||| || |||||    
T  18392979 gtgacaattaaaaaggaacggaggagta 18392952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 2642835 - 2642949
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaa 112  Q
    ||||||||||||||||||||||        ||| ||||||||||||||||||||||||| ||    | ||||| ||||| ||||||||||||||||||||    
T  2642835 attaaatgatgaaggttattattggaaaaagatgaattgttgtatcaaaagtagtaaaaagt----atttgttgtcttggtttgtgtaaaaaactcaaaa 2642930  T
Q  113 gtgataattaaaaaagaac 131  Q
    |||| ||||||||| ||||    
T  2642931 gtgacaattaaaaaggaac 2642949  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 23771420 - 23771534
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaa 112  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||| |||      |||| ||||| |||| |||||||||||||||    
T  23771420 attaaatgatgaaggttattatagaaaaaagataaattgttgtatcaaaagtagtaaaaagtata----tgttgtcttggtttgcgtaaaaaactcaaaa 23771515  T
Q  113 gtgataattaaaaaagaac 131  Q
    |||| ||||||||| ||||    
T  23771516 gtgacaattaaaaaggaac 23771534  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 7678142 - 7678257
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaa-aactcaaa 111  Q
    ||||||||||||| ||||||||        ||||||||||||||| ||||||||||||||||| |    |||| ||||| ||||| ||||| ||||||||    
T  7678142 attaaatgatgaaagttattataggaagaagataaattgttgtattaaaagtagtaaaatgtatt----tgttgtcttggtttgtataaaaaaactcaaa 7678237  T
Q  112 agtgataattaaaaaagaac 131  Q
    | | | ||||||||| ||||    
T  7678238 aataacaattaaaaaggaac 7678257  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 53055686 - 53055736
Alignment:
Q  81 ttgttatcttgatttgtgtaaaaaactcaaaagtgataattaaaaaagaac 131  Q
    ||||| ||||||||| ||||||||||| |||||||| ||||||||| ||||    
T  53055686 ttgttgtcttgatttttgtaaaaaacttaaaagtgacaattaaaaaggaac 53055736  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 26748516 - 26748572
Alignment:
Q  43 gataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaa 104  Q
    |||||||||||||||||||||||||||||      || ||||| ||||||||||||||||||    
T  26748516 gataaattgttgtatcaaaagtagtaaaa-----gcatttgttgtcttgatttgtgtaaaaa 26748572  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 37077303 - 37077412
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaa 112  Q
    ||||||| ||||||||||||||        |||||||| |||||| ||||||||||||||||| |    |||||||||| ||||||||||| ||||||||    
T  37077303 attaaattatgaaggttattatagaaaaaagataaattattgtataaaaagtagtaaaatgtatt----tgttatcttggtttgtgtaaaagactcaaaa 37077398  T
Q  113 gtgataattaaaaa 126  Q
    |||| |||||||||    
T  37077399 gtgacaattaaaaa 37077412  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 130
Target Start/End: Original strand, 45065205 - 45065318
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaa 112  Q
    ||||||||||||| ||||||||        ||| |||||||| ||||||||||||||||  || |    |||| ||||| ||||||||||||| ||||||    
T  45065205 attaaatgatgaatgttattatagaaaaaagatgaattgttgcatcaaaagtagtaaaaaatatt----tgttgtcttggtttgtgtaaaaaattcaaaa 45065300  T
Q  113 gtgataattaaaaaagaa 130  Q
    |||| |||||||||||||    
T  45065301 gtgacaattaaaaaagaa 45065318  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 37660870 - 37660979
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaa 112  Q
    ||||||||| ||||||||||||        || |||||||||||| |||||||||||||||    || ||||| ||||| ||||||||||||||| ||||    
T  37660870 attaaatgaggaaggttattataggaaaaagaaaaattgttgtattaaaagtagtaaaatg----catttgttgtcttggtttgtgtaaaaaacttaaaa 37660965  T
Q  113 gtgataattaaaaa 126  Q
     | | |||||||||    
T  37660966 ataaaaattaaaaa 37660979  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 7529814 - 7529755
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaat 72  Q
    ||||||||||||||| ||||||        ||||||||||||||||||||||||||||||    
T  7529814 attaaatgatgaaggctattataggaaaatgataaattgttgtatcaaaagtagtaaaat 7529755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 38148082 - 38148032
Alignment:
Q  81 ttgttatcttgatttgtgtaaaaaactcaaaagtgataattaaaaaagaac 131  Q
    ||||| |||||  ||||||||||||||||||||||| ||||||||| ||||    
T  38148082 ttgttgtcttggcttgtgtaaaaaactcaaaagtgacaattaaaaaggaac 38148032  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 30545486 - 30545534
Alignment:
Q  87 tcttgatttgtgtaaaa-aactcaaaagtgataattaaaaaagaacaga 134  Q
    ||||| ||||||||||| ||||||||||||| ||||||||| |||||||    
T  30545486 tcttggtttgtgtaaaaaaactcaaaagtgacaattaaaaaggaacaga 30545534  T

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Target: scaffold0036 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 23269 - 23384
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaa-aactcaaa 111  Q
    |||||||||| |||||||||||        ||||||||||||||||||||||||||||||||| |    |||| ||||  ||||||||||| ||||||||    
T  23269 attaaatgataaaggttattataggaagaagataaattgttgtatcaaaagtagtaaaatgtatt----tgttgtcttagtttgtgtaaaaaaactcaaa 23364  T
Q  112 agtgataattaaaaaagaac 131  Q
    ||||| ||||||||| ||||    
T  23365 agtgacaattaaaaaggaac 23384  T

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Target: scaffold0006 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 96169 - 96055
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaa 112  Q
    ||||||||||||||||||||||        ||| |||||||| |||||||||||||||| ||    | ||||| ||||| |||||||||||| |||||||    
T  96169 attaaatgatgaaggttattataggaaaaagatgaattgttgcatcaaaagtagtaaaaagt----atttgttgtcttggtttgtgtaaaaatctcaaaa 96074  T
Q  113 gtgataattaaaaaagaac 131  Q
    |||| ||||||||| ||||    
T  96073 gtgacaattaaaaaggaac 96055  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 11163399 - 11163513
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaa 112  Q
    ||||||||||||||||||||||        ||| |||||||| |||||||||||||||| ||    | ||||| ||||| |||||||||||| |||||||    
T  11163399 attaaatgatgaaggttattataggaaaaagatgaattgttgcatcaaaagtagtaaaaagt----atttgttgtcttggtttgtgtaaaaatctcaaaa 11163494  T
Q  113 gtgataattaaaaaagaac 131  Q
    |||| ||||||||| ||||    
T  11163495 gtgacaattaaaaaggaac 11163513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 9301650 - 9301530
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaa 112  Q
    ||||||||||||||||||||||         || |||||||| ||||||||||||||||  || |    || ||||||| ||||||||||||||||||||    
T  9301650 attaaatgatgaaggttattataggaaaaatatgaattgttgcatcaaaagtagtaaaaaatatt----tgatatcttggtttgtgtaaaaaactcaaaa 9301555  T
Q  113 gtgataattaaaaaagaacagatga 137  Q
    |||| ||||||||| |||| |||||    
T  9301554 gtgacaattaaaaaggaacggatga 9301530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 8954775 - 8954692
Alignment:
Q  44 ataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaagtgataattaaaaaagaac 131  Q
    |||||||||| ||||||||||||||||| ||| |    |||| ||||  |||||||||||||||||||||||| ||||||||| ||||    
T  8954775 ataaattgttttatcaaaagtagtaaaaagtatt----tgttgtcttagtttgtgtaaaaaactcaaaagtgacaattaaaaatgaac 8954692  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 27193130 - 27193102
Alignment:
Q  43 gataaattgttgtatcaaaagtagtaaaa 71  Q
    |||||||||||||||||||||||||||||    
T  27193130 gataaattgttgtatcaaaagtagtaaaa 27193102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 71
Target Start/End: Original strand, 29126065 - 29126093
Alignment:
Q  43 gataaattgttgtatcaaaagtagtaaaa 71  Q
    |||||||||||||||||||||||||||||    
T  29126065 gataaattgttgtatcaaaagtagtaaaa 29126093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 19812089 - 19812203
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaa 112  Q
    ||||||||||||||||||||||        ||| |||||||| |||||||||||||||| ||| |    |||| | ||| ||||||||||||||||||||    
T  19812089 attaaatgatgaaggttattataagaaaaagatgaattgttgcatcaaaagtagtaaaaagtatt----tgttgttttggtttgtgtaaaaaactcaaaa 19812184  T
Q  113 gtgataattaaaaaagaac 131  Q
    |||| ||||||||| ||||    
T  19812185 gtgacaattaaaaaggaac 19812203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 15432792 - 15432862
Alignment:
Q  1 atgaaaagaaacattaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaa 71  Q
    |||||| |||| ||||||| || |||||||||||        |||||||||||||||||||||||||||||    
T  15432792 atgaaatgaaatattaaattattaaggttattataggaaaaagataaattgttgtatcaaaagtagtaaaa 15432862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 50152566 - 50152675
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaa 112  Q
    |||||||||||||||||||| |        ||| ||||||||||||||||||||||||| ||| |    || | ||||||||||| ||||||||||||||    
T  50152566 attaaatgatgaaggttattgtaggaaaaagatgaattgttgtatcaaaagtagtaaaaagtatt----tgctgtcttgatttgtataaaaaactcaaaa 50152661  T
Q  113 gtgataattaaaaa 126  Q
    |||| |||||||||    
T  50152662 gtgacaattaaaaa 50152675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 11248944 - 11249023
Alignment:
Q  43 gataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaagtgataattaaaaa 126  Q
    |||||||| |||||||||||||||||||||||| |    |||| ||||  ||||||||||||| ||||||||||  ||||||||    
T  11248944 gataaattattgtatcaaaagtagtaaaatgtatt----tgttgtcttagtttgtgtaaaaaaatcaaaagtgacgattaaaaa 11249023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 71
Target Start/End: Original strand, 45230681 - 45230709
Alignment:
Q  43 gataaattgttgtatcaaaagtagtaaaa 71  Q
    |||||||||||||||||||||||||||||    
T  45230681 gataaattgttgtatcaaaagtagtaaaa 45230709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 252727 - 252841
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaa 112  Q
    ||||||||||||||||||||||        ||| |||||||| || ||||||||||||| ||| |    | || ||||| ||||||||||||||||||||    
T  252727 attaaatgatgaaggttattataggaaaaagatgaattgttgcataaaaagtagtaaaaagtatt----tcttgtcttggtttgtgtaaaaaactcaaaa 252822  T
Q  113 gtgataattaaaaaagaac 131  Q
    |||| ||||||||| ||||    
T  252823 gtgacaattaaaaaggaac 252841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 14358 - 14244
Alignment:
Q  13 attaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgtactcaattgttatcttgatttgtgtaaaaaactcaaaa 112  Q
    ||||||||||||||||||||||         ||||||| ||| ||||||||||||||||  || |    |||| ||||||||| ||||||| ||||||||    
T  14358 attaaatgatgaaggttattataggaaaaaaataaattattgcatcaaaagtagtaaaaattatt----tgttgtcttgatttctgtaaaagactcaaaa 14263  T
Q  113 gtgataattaaaaaagaac 131  Q
    |||| ||||||||| ||||    
T  14262 gtgacaattaaaaaggaac 14244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 369524 - 369598
Alignment:
Q  1 atgaaaagaaacattaaatgatgaaggttattatnnnnnnnngataaattgttgtatcaaaagtagtaaaatgta 75  Q
    |||||| |||| |||||||||| || ||||||||        |||||| ||||||||||||||||||||||||||    
T  369524 atgaaatgaaatattaaatgataaaagttattataggaaaaagataaactgttgtatcaaaagtagtaaaatgta 369598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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