View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_low_16 (Length: 393)
Name: NF2532_low_16
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 49865147 - 49865511
Alignment:
| Q |
18 |
agaattgtcttttggattgtgtgtagagtgtatcttggtaaccatccatttgacagttgtagaacaatgctttgtctgctgttacacggagggccactgc |
117 |
Q |
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| T |
49865147 |
agaattgtcttttggattgtgtgtagagtgtatcttggtaaccgtccatttgacagttgtagaacaatgctttgtctgctgttacacggagggccactgc |
49865246 |
T |
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| Q |
118 |
ttggtgctttgcggccccggctgagttctcgaatccgacgttcaaggcggtgaaatgggcagagttcacacctgccaattaataacaactcgataaacac |
217 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
49865247 |
ttggtgctttgcggcaccggctgagttctcaaatccgacgttcaaggcggtgaaatgggcagagttcacacctgccaattaataacaacccgatatacac |
49865346 |
T |
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| Q |
218 |
aacttacaattttttagagatccatattaaacattgcattaaaattgagtagtaacttaccgaatgttgcggtattgtaagtctgcacaccatcagcata |
317 |
Q |
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| T |
49865347 |
aacttacaattttttagagatccatattaaacattgcattaaaattgagtagtaacttaccgaatgttgcggtattgtaagtctgcacaccatcagcata |
49865446 |
T |
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| Q |
318 |
gcttttgctgccggtaaatatggtctttgtgggaccatcgccaataatagtaacatgatccctat |
382 |
Q |
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| T |
49865447 |
gcttttgctgccagtaaatatggtctttgtgggaccatcgccaataatagtaacatggtccctat |
49865511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 49871084 - 49871443
Alignment:
| Q |
18 |
agaattgtcttttggattgtgtgtagagtgtatcttggtaaccatccatttgacagttgtagaacaatgctttgtctgctgttacacggagggccactgc |
117 |
Q |
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| T |
49871084 |
agaattgtcttttggattgtgtgtagagtgtatcttggtaaccgttcatttcacagttgtagaacaatgctttgtctgctgttacacggagggccactgc |
49871183 |
T |
|
| Q |
118 |
ttggtgctttgcggccccggctgagttctcgaatccgacgttcaaggcggtgaaatgggcagagttcacacctgccaattaataacaactcgataaacac |
217 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| ||||| | || |
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| T |
49871184 |
ttgatgctttgcggcaccggctgagttctcgaatccgacgttaaaggccgtgaaatgggcagagttcacacctgtcaattaataacaaatcgatcattac |
49871283 |
T |
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| Q |
218 |
aacttacaa-ttttttagagatcc---atattaaacattgcattaaaattgagtagtaacttaccgaatgttgcggtattgtaagtctgcacaccatcag |
313 |
Q |
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| T |
49871284 |
aacttacaacttaggaacagatgctaaatattaatcattgcat----------tagtaacttactgaatgttgcggtattgtaagtctgcacaccatcac |
49871373 |
T |
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| Q |
314 |
catagcttttgctgccggtaaatatggtctttgtgggaccatcgccaataatagtaacatgatccctatg |
383 |
Q |
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| T |
49871374 |
catagcttttgctaccagtaaatatggtctttttgggaccatcaccaataatagtaacatggtccctatg |
49871443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 120
Target Start/End: Complemental strand, 13960407 - 13960329
Alignment:
| Q |
42 |
agagtgtatcttggtaaccatccatttgacagttgtagaacaatgctttgtctgctgttacacggagggccactgcttg |
120 |
Q |
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||||||| ||||||||||||| ||||| ||||||||||| | |||||||||||||||||| ||||| || |||||||| |
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| T |
13960407 |
agagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcggagtgcaactgcttg |
13960329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 13967573 - 13967493
Alignment:
| Q |
40 |
gtagagtgtatcttggtaaccatccatttgacagttgtagaacaatgctttgtctgctgttacacggagggccactgcttg |
120 |
Q |
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| T |
13967573 |
gtagagtgtgtcttggaaaccgtccatttgacagttgtggaatattgcttgatctgctgttactcggagggcaactgcttg |
13967493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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