View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_low_18 (Length: 374)
Name: NF2532_low_18
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 359
Target Start/End: Original strand, 25578512 - 25578860
Alignment:
| Q |
11 |
atgagttaacattaaaaaaccaattaaacacaatattgatgaattctccaattcagattctattctctgaagggcatcaaaaaaccagaagaagaaacaa |
110 |
Q |
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| T |
25578512 |
atgagttaacattaaaaaaccaattaaacacaatattgatgaattctccaattcagattctattttctgaagggcatcaaaaaaccagaagaagaaacaa |
25578611 |
T |
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| Q |
111 |
taattcaatcaaactacaaatatttgagaaaacgtgtactttacatcttgtgtcgttgtaagaaatgtctctagtttgaagaattcgaccaagtttagta |
210 |
Q |
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| T |
25578612 |
taattcaatcaaactacaaatatttgagaaaatgtggactttacatcttgtgtcgttgcaagaaatgtctctagtttgaagaattcgaccaagtttagta |
25578711 |
T |
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| Q |
211 |
gaaaattgagacaatgagaagagatttagatttgaagtgtttttatggaagtttttaggtaaatttcgaaaatgtgaagtgagcgaaagtaaccgagtat |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25578712 |
gaaaattgagacaatgagaagagatttagatttgaagtgtttttatggaagtttttaggtaaatttcgaaaatgtgaagtgagcgaaagtaaccgagcat |
25578811 |
T |
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| Q |
311 |
tgcatatataatagtacaattcaaattatacaatttgaagcatgttttt |
359 |
Q |
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| T |
25578812 |
tgcatatataatagtacaaatcaaattatacaatccaaagcatgttttt |
25578860 |
T |
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