View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_low_19 (Length: 356)
Name: NF2532_low_19
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_low_19 |
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| [»] scaffold0040 (1 HSPs) |
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Alignment Details
Target: scaffold0040 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 23 - 346
Target Start/End: Original strand, 68504 - 68820
Alignment:
| Q |
23 |
cacacttccactctttggtcaatccctctcatattttaattgttgttgttgttaaaaacatcaattattttttatgaacaggaataccacaaacatcaat |
122 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
68504 |
cacacttccactctttggtcaatccctcttatattttaattgttgttgttgttaaaaacatcaattattttttatgaacaggaataccacaaacatcaat |
68603 |
T |
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| Q |
123 |
tgaacaagaaaatcattaaaatataattcaattaaacaaaacaatattggggctttgttgagagagttccgtgggtaggttgtcttcttgattaagagaa |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
68604 |
tgaacaagaaaatcattaaaatataattcaattaaacaaaacaatattggggctttgttgagagagttcagtgggtaggttgtcttcttgattaagagaa |
68703 |
T |
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| Q |
223 |
tgatggggtttggtgtttggtgtttgtgtaatgggtggaaagcaacgacatgtcttaaggatgtataaattttatttgtgtagtgggtttgcttccttca |
322 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
68704 |
tgatggg-------gtttggtgtttgtgtaatgggtggaaagcaacgacatgtcttaaggatgtataaattttatttgtgtagtgggtttgcttccttca |
68796 |
T |
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| Q |
323 |
tgttgttggtgccgtgagcctttg |
346 |
Q |
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|||||||||||| ||| ||||||| |
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| T |
68797 |
tgttgttggtgctgtgggcctttg |
68820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 24 - 346
Target Start/End: Complemental strand, 7252954 - 7252639
Alignment:
| Q |
24 |
acacttccactctttggtcaatccctctcatattttaattgttgttgttgttaaaaacatcaattattttttatgaacaggaataccacaaacatcaatt |
123 |
Q |
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| T |
7252954 |
acacttccactctttggtcaatccctctcatattttaattgctgttgttgttaaaaacatcaattattttttatgaacaggaataccacaaacatcaatt |
7252855 |
T |
|
| Q |
124 |
gaacaagaaaatcattaaaatataattcaattaaacaaaacaatattggggctttgttgagagagttccgtgggtaggttgtcttcttgattaagagaat |
223 |
Q |
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| T |
7252854 |
gaacaagaaaatcattaaaatataattcaattaaacaaaacaatattgaggctttgttgagagagttcagtgggtaggttgtcttcttgattaagagaat |
7252755 |
T |
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| Q |
224 |
gatggggtttggtgtttggtgtttgtgtaatgggtggaaagcaacgacatgtcttaaggatgtataaattttatttgtgtagtgggtttgcttccttcat |
323 |
Q |
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| T |
7252754 |
gatggggtttggtg-------tttgtgtaatgggtggaaagcaacgacatgtcttaaggatgtataaattttatttgtgtagtgggtttgcttccttcat |
7252662 |
T |
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| Q |
324 |
gttgttggtgccgtgagcctttg |
346 |
Q |
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|||||||||| |||||||||||| |
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| T |
7252661 |
gttgttggtgtcgtgagcctttg |
7252639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 135
Target Start/End: Original strand, 2704407 - 2704522
Alignment:
| Q |
20 |
ttccacacttccactctttggtcaatccctctcatattttaattgttgttgttgttaaaaacatcaattattttttatgaacaggaataccacaaacatc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2704407 |
ttccacacttccactctttggtcaatccctctcatattttaattgctgttgttgttaaaaacatcaattattttttatgaacaggaataccacaaacatc |
2704506 |
T |
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| Q |
120 |
aattgaacaagaaaat |
135 |
Q |
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| T |
2704507 |
aattgaacaagaaaat |
2704522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 22630980 - 22630921
Alignment:
| Q |
78 |
aaacatcaattattttttatgaacaggaataccacaaacatcaattgaacaagaaaatcatt |
139 |
Q |
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|||||||||||||||||||| || | ||||||||||||||||||||||||||||| |||| |
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| T |
22630980 |
aaacatcaattattttttataaatac--ataccacaaacatcaattgaacaagaaaaccatt |
22630921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 51195285 - 51195234
Alignment:
| Q |
78 |
aaacatcaattattttttatgaacaggaataccacaaacatcaattgaacaaga |
131 |
Q |
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| T |
51195285 |
aaacatcaattattttttataaatac--ataccacaaacatcaattgaacaaga |
51195234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 43039386 - 43039353
Alignment:
| Q |
106 |
ataccacaaacatcaattgaacaagaaaatcatt |
139 |
Q |
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| T |
43039386 |
ataccacaaacatcaattgaacaagacaatcatt |
43039353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 43039291 - 43039243
Alignment:
| Q |
194 |
tgggtaggttgtcttcttgattaaga-gaatgatggggtttggtgtttg |
241 |
Q |
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|||||| ||||| ||||||||||||| ||||| |||||||||||||||| |
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| T |
43039291 |
tgggtaagttgtgttcttgattaagaggaatggtggggtttggtgtttg |
43039243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 18016110 - 18016059
Alignment:
| Q |
78 |
aaacatcaattattttttatgaacaggaataccacaaacatcaattgaacaaga |
131 |
Q |
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| T |
18016110 |
aaacatcaattattttttataaatac--ataccacaaacatcaattgaacaaga |
18016059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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