View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2532_low_2 (Length: 568)

Name: NF2532_low_2
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2532_low_2
NF2532_low_2
[»] chr5 (25 HSPs)
chr5 (326-539)||(12251787-12252000)
chr5 (127-298)||(12251491-12251662)
chr5 (133-291)||(12244885-12245043)
chr5 (15-91)||(12251005-12251081)
chr5 (20-88)||(28569002-28569070)
chr5 (15-94)||(23044966-23045045)
chr5 (33-94)||(43523801-43523862)
chr5 (21-90)||(10834537-10834605)
chr5 (33-94)||(18116492-18116553)
chr5 (474-526)||(12258704-12258756)
chr5 (21-91)||(2681257-2681327)
chr5 (20-94)||(15890246-15890320)
chr5 (41-94)||(3564713-3564766)
chr5 (33-86)||(6155903-6155956)
chr5 (22-91)||(10127116-10127185)
chr5 (20-68)||(34259295-34259343)
chr5 (20-91)||(4583159-4583230)
chr5 (20-91)||(33727979-33728050)
chr5 (20-86)||(4920866-4920932)
chr5 (33-91)||(29245929-29245987)
chr5 (20-94)||(40517846-40517920)
chr5 (20-94)||(42987454-42987528)
chr5 (38-91)||(12915531-12915584)
chr5 (15-63)||(12712563-12712611)
chr5 (15-63)||(12773827-12773875)
[»] chr7 (28 HSPs)
chr7 (20-91)||(18684019-18684090)
chr7 (21-91)||(22973434-22973504)
chr7 (21-94)||(42908015-42908088)
chr7 (20-91)||(32546237-32546311)
chr7 (20-94)||(27063379-27063453)
chr7 (21-86)||(12980423-12980488)
chr7 (21-77)||(10990852-10990908)
chr7 (20-88)||(27063183-27063251)
chr7 (20-91)||(3157128-3157199)
chr7 (20-91)||(10072511-10072582)
chr7 (36-91)||(37579322-37579377)
chr7 (20-91)||(43218328-43218399)
chr7 (20-90)||(30839112-30839182)
chr7 (25-99)||(44845104-44845178)
chr7 (20-86)||(45380152-45380218)
chr7 (41-86)||(37195991-37196036)
chr7 (41-94)||(38152953-38153006)
chr7 (25-92)||(29014928-29014995)
chr7 (20-87)||(31426053-31426120)
chr7 (221-264)||(33355202-33355245)
chr7 (20-91)||(35074515-35074586)
chr7 (20-91)||(39455992-39456063)
chr7 (33-91)||(7780066-7780124)
chr7 (20-94)||(21702704-21702778)
chr7 (20-86)||(45885747-45885813)
chr7 (20-77)||(3226937-3226994)
chr7 (20-73)||(18825867-18825920)
chr7 (39-87)||(29157415-29157463)
[»] scaffold0184 (1 HSPs)
scaffold0184 (18-90)||(3007-3079)
[»] scaffold0008 (2 HSPs)
scaffold0008 (20-91)||(67789-67860)
scaffold0008 (20-91)||(75632-75703)
[»] chr8 (14 HSPs)
chr8 (20-91)||(15068565-15068636)
chr8 (15-88)||(15173860-15173933)
chr8 (20-91)||(20399632-20399703)
chr8 (20-94)||(37960936-37961010)
chr8 (32-87)||(2183587-2183642)
chr8 (20-91)||(27932453-27932524)
chr8 (20-91)||(39445553-39445624)
chr8 (33-86)||(17220765-17220818)
chr8 (20-91)||(5858629-5858700)
chr8 (20-91)||(32303101-32303172)
chr8 (20-86)||(6388498-6388564)
chr8 (33-94)||(40248345-40248406)
chr8 (20-68)||(9642351-9642399)
chr8 (20-68)||(17469295-17469343)
[»] chr1 (21 HSPs)
chr1 (20-91)||(19003643-19003714)
chr1 (20-86)||(5181080-5181146)
chr1 (33-86)||(45866167-45866220)
chr1 (20-91)||(16408983-16409054)
chr1 (20-91)||(36187197-36187268)
chr1 (20-94)||(44615449-44615523)
chr1 (20-94)||(44793046-44793120)
chr1 (20-76)||(12718764-12718820)
chr1 (20-63)||(16237309-16237352)
chr1 (20-87)||(35069870-35069937)
chr1 (41-91)||(13390459-13390509)
chr1 (20-86)||(17134988-17135054)
chr1 (20-86)||(19572494-19572560)
chr1 (20-86)||(23490753-23490819)
chr1 (20-86)||(51421899-51421965)
chr1 (21-78)||(23968621-23968678)
chr1 (33-94)||(24236735-24236796)
chr1 (21-78)||(33293521-33293578)
chr1 (21-86)||(49250755-49250820)
chr1 (18-86)||(29871267-29871335)
chr1 (42-86)||(35936811-35936855)
[»] scaffold0005 (1 HSPs)
scaffold0005 (20-90)||(211404-211474)
[»] chr6 (15 HSPs)
chr6 (20-94)||(2367366-2367440)
chr6 (20-94)||(20610956-20611030)
chr6 (20-96)||(28079668-28079744)
chr6 (20-68)||(29199885-29199933)
chr6 (20-91)||(5863360-5863431)
chr6 (20-91)||(9458898-9458969)
chr6 (20-94)||(27738812-27738886)
chr6 (20-94)||(18908933-18909007)
chr6 (22-91)||(10188057-10188126)
chr6 (27-91)||(9458710-9458774)
chr6 (20-91)||(30986293-30986364)
chr6 (20-86)||(10142500-10142566)
chr6 (20-78)||(24225738-24225796)
chr6 (20-86)||(32853884-32853950)
chr6 (20-77)||(20349104-20349161)
[»] chr4 (25 HSPs)
chr4 (20-90)||(14605904-14605974)
chr4 (20-91)||(41914974-41915045)
chr4 (20-91)||(47103784-47103855)
chr4 (21-91)||(1866527-1866597)
chr4 (36-94)||(7334172-7334230)
chr4 (25-88)||(30673012-30673075)
chr4 (32-91)||(31415909-31415968)
chr4 (20-87)||(45065295-45065362)
chr4 (20-86)||(39375324-39375390)
chr4 (15-91)||(15733504-15733580)
chr4 (20-91)||(6382250-6382321)
chr4 (20-91)||(10302130-10302201)
chr4 (21-68)||(11173020-11173067)
chr4 (21-68)||(21544626-21544673)
chr4 (20-63)||(29527858-29527901)
chr4 (20-91)||(44317581-44317652)
chr4 (15-78)||(50684508-50684571)
chr4 (20-86)||(11028119-11028185)
chr4 (33-91)||(37349171-37349229)
chr4 (20-86)||(43309529-43309595)
chr4 (41-86)||(1724252-1724297)
chr4 (21-86)||(19548920-19548985)
chr4 (20-72)||(1724307-1724359)
chr4 (20-68)||(10574420-10574468)
chr4 (32-68)||(31782671-31782707)
[»] chr3 (15 HSPs)
chr3 (20-94)||(4016018-4016092)
chr3 (21-90)||(2490346-2490415)
chr3 (20-91)||(48390794-48390865)
chr3 (20-94)||(4557279-4557353)
chr3 (33-94)||(6738379-6738440)
chr3 (18-89)||(35687470-35687541)
chr3 (20-91)||(49580104-49580175)
chr3 (20-94)||(34025994-34026068)
chr3 (20-91)||(39655250-39655321)
chr3 (20-91)||(44953412-44953483)
chr3 (20-86)||(10043264-10043330)
chr3 (20-94)||(30616255-30616329)
chr3 (20-86)||(44172666-44172732)
chr3 (20-86)||(44179366-44179432)
chr3 (33-86)||(20087050-20087103)
[»] chr2 (13 HSPs)
chr2 (20-91)||(37472736-37472807)
chr2 (21-87)||(44057925-44057991)
chr2 (20-91)||(37106733-37106804)
chr2 (20-87)||(43371594-43371661)
chr2 (26-94)||(26755787-26755855)
chr2 (20-91)||(7314625-7314696)
chr2 (20-91)||(15546785-15546856)
chr2 (20-91)||(30846987-30847058)
chr2 (20-87)||(38342500-38342567)
chr2 (15-73)||(3547202-3547260)
chr2 (20-86)||(22900835-22900901)
chr2 (221-261)||(40442544-40442584)
chr2 (221-261)||(40503701-40503741)
[»] scaffold0036 (1 HSPs)
scaffold0036 (20-78)||(33433-33491)
[»] scaffold0013 (1 HSPs)
scaffold0013 (20-89)||(105448-105517)
[»] scaffold0059 (1 HSPs)
scaffold0059 (20-78)||(70135-70193)


Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 326 - 539
Target Start/End: Original strand, 12251787 - 12252000
Alignment:
Q  326 aaaacaaaagcatgaagtttacggccgttgctggcagtcatcttcagctacgtagttgctactactactgctttcgtcctcttcaattgtcccatggacc 425  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12251787 aaaataaaagcatgaagtttatggccgttgctggcagtcatcttcagctacgtagttgctactactactgctttcgtcctcttcaattgtcccatggacc 12251886  T
Q  426 atggctatatgtgtttccggttagatcagaatattgtttttctctggattttgcgaagatgtaaaaatgtatatcaattacctaactctatagaatatgg 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12251887 atggctatatgtgtttccggttagatcagaatattgtttttctctggattttgcgaagatgtaaaaatgtatatcaattacctaactctatagaatatgg 12251986  T
Q  526 accagaaccctttc 539  Q
    ||||||||||||||    
T  12251987 accagaaccctttc 12252000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 127 - 298
Target Start/End: Original strand, 12251491 - 12251662
Alignment:
Q  127 gaagaggaaagcaagttaaaacaaaccaccgtgtgcatcaaaaaagttgttgacaagaatgtacaaagctataaaaaattggacaaaacttaagtggttc 226  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12251491 gaaggggaaagcaagtgaaaacaaaccaccgtgtgcatcaaaaaagttgttgacaagaatgtactaagctataaaaaattggacaaaacttaagtggttc 12251590  T
Q  227 ttcacataaaattcacattttgtggttataacaaacttcaaaaatattatggattcgaaaaatcacccatag 298  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12251591 ttcacataaaatccacattttgtggttataacaaacttcaaaaatattatggattcgaaaaatcatccatag 12251662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 133 - 291
Target Start/End: Original strand, 12244885 - 12245043
Alignment:
Q  133 gaaagcaagttaaaacaaaccaccgtgtgcatcaaaaaagttgttgacaagaatgtacaaagctataaaaaat-tggacaaaacttaagtggttcttcac 231  Q
    |||||||||| ||||||||||||| |   ||| |||||||||||||||| |||||  | |||||||||||||  ||||||||||| | ||| ||||||||    
T  12244885 gaaagcaagtgaaaacaaaccaccatcaacattaaaaaagttgttgacaggaatgagctaagctataaaaaaaatggacaaaactcatgtgattcttcac 12244984  T
Q  232 ataaaattcacattttgtggttataacaaacttcaaaaatattatggattcgaaaaatca 291  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  12244985 ataaaatccacattttatggttataacaaacttcaaaaatattatggatt-gaaaaatca 12245043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 12251005 - 12251081
Alignment:
Q  15 tctcagttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||    
T  12251005 tctctgttacccgtccggtacccgtattttgaaatcgtgaaaaatccaagcccatacccgaacctagtcaaatcggg 12251081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 28569070 - 28569002
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatc 88  Q
    ||||||||||| ||||||| |||||||||||||||||||||||| | |||||||||||| |||||||||    
T  28569070 gttacccgtcccgtacccgcattttgaaatcggggaaaatccaaactcatacccaaacccagtcaaatc 28569002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 23045045 - 23044966
Alignment:
Q  15 tctcagttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||| ||||||| ||| ||||||||||||||||||||||||||| | || |||||||||||||  |||||||| ||||||    
T  23045045 tctccgttacccatcccgtacccgtattttgaaatcggggaaaacctaaacccatacccaaactcagtcaaattgggaaa 23044966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 43523801 - 43523862
Alignment:
Q  33 tacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||||||||||||||||||||||||| |||| | |||||||||||  |||||||||||||||    
T  43523801 tacccgtattttgaaatcggggaaaacccaaactcatacccaaactcagtcaaatcgggaaa 43523862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 10834537 - 10834605
Alignment:
Q  21 ttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgg 90  Q
    |||||||||| |||||| |||| |||||| ||| ||||||||| |||||||| |||||||||||||||||    
T  10834537 ttacccgtcccgtaccc-tattatgaaattgggaaaaatccaaacccataccaaaacctagtcaaatcgg 10834605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 18116553 - 18116492
Alignment:
Q  33 tacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||||||||||||||||||| ||||| |||| | |||||||||||  |||||||||||||||    
T  18116553 tacccgtattttgaaatcggagaaaacccaaactcatacccaaactcagtcaaatcgggaaa 18116492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 474 - 526
Target Start/End: Original strand, 12258704 - 12258756
Alignment:
Q  474 ttttgcgaagatgtaaaaatgtatatcaattacctaactctatagaatatgga 526  Q
    |||||| |||||||||||||||| |||||| |||||||||| |||||||||||    
T  12258704 ttttgcaaagatgtaaaaatgtaaatcaataacctaactctttagaatatgga 12258756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 2681257 - 2681327
Alignment:
Q  21 ttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||| ||| ||||| ||||||||||||||||||||| |||| | ||| |||||||  ||||||||||||    
T  2681257 ttacccatcccgtacctgtattttgaaatcggggaaaacccaaactcatgcccaaactcagtcaaatcggg 2681327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 15890246 - 15890320
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||||||||||  ||||||| |||||||||||| ||||| |||  | |||| ||||||||||||||| |||||||    
T  15890246 gttacccgtcccatacccgtgttttgaaatcggagaaaacccatacacatagccaaacctagtcaaaacgggaaa 15890320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Complemental strand, 3564766 - 3564713
Alignment:
Q  41 ttttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||||||||||| |||||||||  |||||||||||||| ||||||| |||||||    
T  3564766 ttttgaaatcggagaaaatccatacccatacccaaacccagtcaaaacgggaaa 3564713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 6155956 - 6155903
Alignment:
Q  33 tacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    ||||||| |||||||||||||||||| |||| | |||||||||||| |||||||    
T  6155956 tacccgtgttttgaaatcggggaaaacccaaacacatacccaaacccagtcaaa 6155903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 10127116 - 10127185
Alignment:
Q  22 tacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||  ||||||| |||||| ||||||||||| |||  |||||||||||||| ||||||| ||||    
T  10127116 tacccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacccagtcaaaacggg 10127185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 34259295 - 34259343
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagccca 68  Q
    |||||||||||||||||| ||||||||||||| ||||||| ||| ||||    
T  34259295 gttacccgtccggtacccatattttgaaatcgaggaaaattcaaaccca 34259343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 4583159 - 4583230
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||||| |||||||||||||||||| |||  |||||| ||||||| | ||||| ||||    
T  4583159 gttacccgtcccatacccgtgttttgaaatcggggaaaacccatacccatatccaaacccaatcaaaacggg 4583230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 33728050 - 33727979
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||||| |||||| |||||||||||||||  |||||| ||||||| | ||||| ||||    
T  33728050 gttacccgtcccatacccgtgttttgagatcggggaaaatccatacccatatccaaacccaatcaaaacggg 33727979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 4920866 - 4920932
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    |||||||||||  ||||||| |||||| ||||||||||| |||  |||||| ||||||| |||||||    
T  4920866 gttacccgtcccatacccgtgttttgagatcggggaaaacccatacccataaccaaacccagtcaaa 4920932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 29245987 - 29245929
Alignment:
Q  33 tacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    ||||||| |||||||||||| |||||  ||  |||||||||||||||||||||| ||||    
T  29245987 tacccgtgttttgaaatcggagaaaactcatacccatacccaaacctagtcaaaacggg 29245929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 40517846 - 40517920
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    ||||||| |||  ||||||| |||||  ||||||||||| |||  |||||||||||||| ||||||| |||||||    
T  40517846 gttacccatcccatacccgtgttttgggatcggggaaaacccatacccatacccaaacccagtcaaaacgggaaa 40517920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 42987528 - 42987454
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    ||||| |||||  ||||||| |||||| |||||||||||||||  ||| |||||||||  ||||||| |||||||    
T  42987528 gttacacgtcccatacccgtgttttgagatcggggaaaatccatacccgtacccaaactcagtcaaaacgggaaa 42987454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 12915531 - 12915584
Alignment:
Q  38 gtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    ||||| |||||||||| |||| |||| ||||||||||| || ||||||||||||    
T  12915531 gtattatgaaatcgggaaaaacccaaacccatacccaaccccagtcaaatcggg 12915584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 12712611 - 12712563
Alignment:
Q  15 tctcagttacccgtccggtacccgtattttgaaatcggggaaaatccaa 63  Q
    |||| |||| |||||| ||||||||||||||||||||| ||||| ||||    
T  12712611 tctccgttatccgtcccgtacccgtattttgaaatcggagaaaacccaa 12712563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 12773875 - 12773827
Alignment:
Q  15 tctcagttacccgtccggtacccgtattttgaaatcggggaaaatccaa 63  Q
    |||| |||| |||||| ||||||||||||||||||||| ||||| ||||    
T  12773875 tctccgttatccgtcccgtacccgtattttgaaatcggagaaaacccaa 12773827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 18684019 - 18684090
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    ||||||||||| ||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||    
T  18684019 gttacccgtcccgtacccgtattttgaaatcggggaaaacccgaacccatacccaaacctagtcaaatcggg 18684090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 22973434 - 22973504
Alignment:
Q  21 ttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||| |||||||||||||||||||| |||||| |||| |||||||||||||| ||||||||||||    
T  22973434 ttacccgtcccgtacccgtattttgaaatcgtggaaaacccaaacccatacccaaacccagtcaaatcggg 22973504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 42908088 - 42908015
Alignment:
Q  21 ttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||||||||| ||||||||||||||||||||||||||| |||| | |||||||||||| | |||||| ||||||    
T  42908088 ttacccgtcccgtacccgtattttgaaatcggggaaaacccaaactcatacccaaacccaatcaaattgggaaa 42908015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 32546237 - 32546311
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccata---cccaaacctagtcaaatcggg 91  Q
    ||||||||| | |||||||||||||||||||||| ||||||||| ||||||   |||||||| ||||||||||||    
T  32546237 gttacccgttccgtacccgtattttgaaatcgggaaaaatccaaacccatacgccccaaacccagtcaaatcggg 32546311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 27063379 - 27063453
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    ||||||||||| ||||||||||| | ||||||||||||| | |  |||||||||||||| |||||||| ||||||    
T  27063379 gttacccgtcccgtacccgtattattaaatcggggaaaaccgagacccatacccaaacccagtcaaattgggaaa 27063453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 12980423 - 12980488
Alignment:
Q  21 ttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    ||||||||||  ||||||| |||||||||||||||||| | || |||||||||||||| |||||||    
T  12980423 ttacccgtcccatacccgtgttttgaaatcggggaaaaccaaaacccatacccaaacccagtcaaa 12980488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 10990908 - 10990852
Alignment:
Q  21 ttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaac 77  Q
    |||||||||| ||||||||||||||||||||||||||| || | ||||||| |||||    
T  10990908 ttacccgtcccgtacccgtattttgaaatcggggaaaaacccaacccatactcaaac 10990852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 27063183 - 27063251
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatc 88  Q
    |||| |||||| |||||||||||||||||||| ||||||  ||| | |||||||||||| |||||||||    
T  27063183 gttatccgtcctgtacccgtattttgaaatcgaggaaaactcaaactcatacccaaacccagtcaaatc 27063251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 3157128 - 3157199
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||| ||||||  ||||| |||||||||||||||||||| | || |||||||||||||| ||||||| ||||    
T  3157128 gttatccgtcccatacccatattttgaaatcggggaaaacctaaacccatacccaaaccaagtcaaagcggg 3157199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 10072511 - 10072582
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    ||||||||| |  ||||||| |||||||||||||||||| |||  |||||||||||||| ||||||| ||||    
T  10072511 gttacccgttccatacccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaacggg 10072582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 37579322 - 37579377
Alignment:
Q  36 ccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||| ||| ||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  37579322 ccgtgtttcgaaatcgggaaaaatccaaacccatacccaaacctagtcaaaacggg 37579377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 43218328 - 43218399
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    ||||||||||| | |||  |||| |||||| |||||||| |||| |||||||||||||| ||||||||||||    
T  43218328 gttacccgtcccgcacctatattatgaaattggggaaaacccaaacccatacccaaacccagtcaaatcggg 43218399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 30839182 - 30839112
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgg 90  Q
    ||||| |||||  |||||||||||||||||| |||||||  ||| | |||||||||||| |||||||||||    
T  30839182 gttactcgtcccatacccgtattttgaaatcagggaaaactcaaactcatacccaaacccagtcaaatcgg 30839112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 44845178 - 44845104
Alignment:
Q  25 ccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaataaat 99  Q
    |||||| ||||||||||| ||||||||||||||| |||| |||||||| ||||  ||||||| ||| ||| ||||    
T  44845178 ccgtcccgtacccgtattatgaaatcggggaaaacccaaacccataccaaaactcagtcaaaacggaaaaaaaat 44845104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 45380152 - 45380218
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    |||||||||||  ||||||||||||||||||||| |||| |||  |||||| ||||||| |||||||    
T  45380152 gttacccgtcccatacccgtattttgaaatcgggaaaaacccatacccatatccaaacccagtcaaa 45380218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 37196036 - 37195991
Alignment:
Q  41 ttttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    ||||||||||||||||||||||  |||||||||||||||| |||||    
T  37196036 ttttgaaatcggggaaaatccatacccatacccaaacctaatcaaa 37195991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 38152953 - 38153006
Alignment:
Q  41 ttttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||||||||||||||||| |||  |||||||||||||| ||||||| |||||||    
T  38152953 ttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaacgggaaa 38153006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 29014995 - 29014928
Alignment:
Q  25 ccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggga 92  Q
    |||||| |||||||||||||||||||||| ||||  ||| | |||||| ||||| | |||||||||||    
T  29014995 ccgtcccgtacccgtattttgaaatcgggaaaaactcaaactcatacctaaacccaatcaaatcggga 29014928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 31426053 - 31426120
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaat 87  Q
    ||||||||||   |||||||||||| ||||||||||||| |||| || ||||| ||||| ||||||||    
T  31426053 gttacccgtctcatacccgtatttttaaatcggggaaaacccaaaccaataccaaaacccagtcaaat 31426120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 33355202 - 33355245
Alignment:
Q  221 tggttcttcacataaaattcacattttgtggttataacaaactt 264  Q
    |||||||||||||||||||||| | ||||| |||||||||||||    
T  33355202 tggttcttcacataaaattcacttgttgtgcttataacaaactt 33355245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 35074515 - 35074586
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||||| |||| | ||||||||||| |||  |||||||||||||| ||||||| ||||    
T  35074515 gttacccgtcccatacccgtgttttaagatcggggaaaacccatacccatacccaaacccagtcaaaacggg 35074586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 39456063 - 39455992
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||| | |||||||||||||||||| |||   ||||||||||||| ||||||| ||||    
T  39456063 gttacccgtcccatacccatgttttgaaatcggggaaaacccatatccatacccaaacccagtcaaaacggg 39455992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 7780066 - 7780124
Alignment:
Q  33 tacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    ||||||| |||||| ||||||||||| |||  |||||||||||||| ||||||| ||||    
T  7780066 tacccgtgttttgagatcggggaaaacccatacccatacccaaacccagtcaaaacggg 7780124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 21702704 - 21702778
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||||||||||  ||||||| ||| || ||||||||||| |||  | |||||||||||| ||||||| |||||||    
T  21702704 gttacccgtcccatacccgtgtttcgagatcggggaaaacccatactcatacccaaacccagtcaaaacgggaaa 21702778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 45885813 - 45885747
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    |||||||||||  ||||||| |||||| |||||||||||  ||  |||||||||||||| |||||||    
T  45885813 gttacccgtcccatacccgtgttttgagatcggggaaaactcatacccatacccaaacccagtcaaa 45885747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 3226994 - 3226937
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaac 77  Q
    |||||||||||  ||||||| |||||||||||||||||| |||  ||||||| |||||    
T  3226994 gttacccgtcccatacccgtgttttgaaatcggggaaaacccatacccatactcaaac 3226937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 18825920 - 18825867
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccataccc 73  Q
    |||||||||||  ||||||| |||||||||||||||||| |||| |||| ||||    
T  18825920 gttacccgtcccatacccgtgttttgaaatcggggaaaacccaaacccacaccc 18825867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 29157415 - 29157463
Alignment:
Q  39 tattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaat 87  Q
    |||| ||||||||||||||||||||  |||||||||||||  |||||||    
T  29157415 tattatgaaatcggggaaaatccaaaaccatacccaaaccctgtcaaat 29157463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 3007 - 3079
Alignment:
Q  18 cagttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgg 90  Q
    |||||| |||||| ||||||||||||||||||||||||||| |||| | |||||||||||| |||||||||||    
T  3007 cagttatccgtcctgtacccgtattttgaaatcggggaaaacccaaactcatacccaaacccagtcaaatcgg 3079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 67789 - 67860
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||| |||||| ||| ||||||||| |||||||||||||||||| ||||||| |||||| ||||||||||||    
T  67789 gttatccgtcccgtatccgtattttaaaatcggggaaaatccaaacccatactcaaacccagtcaaatcggg 67860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 75632 - 75703
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||| |||||| ||| ||||||||| |||||||||||||||||| ||||||| |||||| ||||||||||||    
T  75632 gttatccgtcccgtatccgtattttaaaatcggggaaaatccaaacccatactcaaacccagtcaaatcggg 75703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 15068636 - 15068565
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||| |||| ||||||||||||||||||||||||||| || | |||||||||| ||| ||||||||||||    
T  15068636 gttacctgtcccgtacccgtattttgaaatcggggaaaacccgaacccatacccagacccagtcaaatcggg 15068565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 15173933 - 15173860
Alignment:
Q  15 tctcagttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatc 88  Q
    ||||| |||||||||| |||||||||||||||||||||| ||||  ||| | |||||||||||| |||||||||    
T  15173933 tctcatttacccgtcccgtacccgtattttgaaatcgggaaaaactcaaacacatacccaaacccagtcaaatc 15173860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 20399632 - 20399703
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||||| |||||||||||| ||||| |||| |||||||||||||| ||||||| ||||    
T  20399632 gttacccgtcccatacccgtgttttgaaatcggagaaaacccaaacccatacccaaacccagtcaaaacggg 20399703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 37961010 - 37960936
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||||| ||||  ||||||| |||| ||||||||||||| |||| | |||||||||||||||||||| |||||||    
T  37961010 gttacctgtcccatacccgtgtttttaaatcggggaaaacccaaactcatacccaaacctagtcaaaacgggaaa 37960936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 2183642 - 2183587
Alignment:
Q  32 gtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaat 87  Q
    ||||||||||||||||||||| |||||||||| | |||||| ||||| ||||||||    
T  2183642 gtacccgtattttgaaatcggagaaaatccaaactcatacctaaacccagtcaaat 2183587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 27932453 - 27932524
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    ||||| |||||  ||||||| |||||||||||||||||| |||  |||||||||||||| ||||||| ||||    
T  27932453 gttactcgtcccatacccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaacggg 27932524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 39445624 - 39445553
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||| ||||  ||||||| ||||||||||||| |||| |||  |||||||||||||||||||||| ||||    
T  39445624 gttacctgtcccatacccgtgttttgaaatcgggaaaaacccatacccatacccaaacctagtcaaaacggg 39445553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 17220765 - 17220818
Alignment:
Q  33 tacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    ||||||| ||||||||||||||||||||||  |||||||||||||  |||||||    
T  17220765 tacccgtgttttgaaatcggggaaaatccatacccatacccaaactcagtcaaa 17220818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 5858700 - 5858629
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||||| |||| |||||||| |||| |||| |||||||||||||| | ||||| ||||    
T  5858700 gttacccgtcccatacccgtgtttttaaatcgggaaaaacccaaacccatacccaaacccaatcaaaacggg 5858629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 32303101 - 32303172
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||||| ||| || ||||||||||| |||  |||||||||||||| ||||||| ||||    
T  32303101 gttacccgtcccatacccgtgtttcgagatcggggaaaacccatacccatacccaaacccagtcaaaacggg 32303172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 6388564 - 6388498
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    ||||||||||  |||||||| |||| ||||||||||| | |||| |||||||||||||  |||||||    
T  6388564 gttacccgtcttgtacccgtgttttaaaatcggggaagacccaaacccatacccaaactcagtcaaa 6388498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 40248406 - 40248345
Alignment:
Q  33 tacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    ||||||| ||||||||||||||||||   |  |||||||||||||| ||||||| |||||||    
T  40248406 tacccgtgttttgaaatcggggaaaacatatacccatacccaaacccagtcaaaacgggaaa 40248345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 9642399 - 9642351
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagccca 68  Q
    |||||||||||  ||||||| |||||||||||||||||| |||| ||||    
T  9642399 gttacccgtcccatacccgtgttttgaaatcggggaaaacccaaaccca 9642351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 17469295 - 17469343
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagccca 68  Q
    |||||||||||  ||||||| |||||||||||||||||| |||| ||||    
T  17469295 gttacccgtcccatacccgtgttttgaaatcggggaaaacccaaaccca 17469343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 19003714 - 19003643
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||| ||||||  ||||||||||||| |||||||||||| || | |||||||||||||||||||||||||||    
T  19003714 gttatccgtcccatacccgtattttgtaatcggggaaaacccgaacccatacccaaacctagtcaaatcggg 19003643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 5181080 - 5181146
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    |||||||||||  |||||||||||||||||||||||||| |||  |||||||| ||||| |||||||    
T  5181080 gttacccgtcccatacccgtattttgaaatcggggaaaacccatacccatacctaaacccagtcaaa 5181146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 45866220 - 45866167
Alignment:
Q  33 tacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    ||||||| |||||||||||||||||| |||  ||||||||||||||||||||||    
T  45866220 tacccgtgttttgaaatcggggaaaacccatacccatacccaaacctagtcaaa 45866167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 16408983 - 16409054
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||||| ||||||||| |||||||| |||  |||||||||||||| ||||||| ||||    
T  16408983 gttacccgtcccatacccgtgttttgaaattggggaaaacccatacccatacccaaacccagtcaaaacggg 16409054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 36187268 - 36187197
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||||| |||||| ||||||||||| |||  |||||||||||||| ||||||| ||||    
T  36187268 gttacccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacccagtcaaaacggg 36187197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 44615523 - 44615449
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||||||||||  ||||||| |||| ||||| ||||||| |||| | |||||||||||| ||||||| |||||||    
T  44615523 gttacccgtcccatacccgtgtttttaaatcagggaaaacccaaactcatacccaaacccagtcaaaacgggaaa 44615449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 44793046 - 44793120
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||||||||||  ||||||| |||| ||||| ||||||| |||| | |||||||||||| ||||||| |||||||    
T  44793046 gttacccgtcccatacccgtgtttttaaatcagggaaaacccaaactcatacccaaacccagtcaaaacgggaaa 44793120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 12718820 - 12718764
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaa 76  Q
    ||||||||||  |||| |||||| |||||||||||||||||||| | ||||||||||    
T  12718820 gttacccgtctcgtacacgtattatgaaatcggggaaaatccaaactcatacccaaa 12718764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 16237352 - 16237309
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaa 63  Q
    |||||||||||  |||||||||||||||||||||||||| ||||    
T  16237352 gttacccgtcccttacccgtattttgaaatcggggaaaacccaa 16237309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 35069937 - 35069870
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaat 87  Q
    ||||||||||  ||||||||||| |||||||||||||||  ||| | |||||||||| | ||||||||    
T  35069937 gttacccgtcttgtacccgtattatgaaatcggggaaaactcaaactcatacccaaatccagtcaaat 35069870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 13390459 - 13390509
Alignment:
Q  41 ttttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    ||||||||||||||||||| ||  |||||||||||||| ||||||| ||||    
T  13390459 ttttgaaatcggggaaaattcatacccatacccaaacccagtcaaaacggg 13390509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 17134988 - 17135054
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    ||||||||||   ||||||| |||||||||||||||||| |||  |||| ||||||||| |||||||    
T  17134988 gttacccgtctcatacccgtgttttgaaatcggggaaaacccatacccacacccaaacccagtcaaa 17135054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 19572560 - 19572494
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    |||||| ||||  ||||||| ||||||||||||| |||| |||  |||||||||||||| |||||||    
T  19572560 gttacctgtcccatacccgtgttttgaaatcgggaaaaacccatacccatacccaaacccagtcaaa 19572494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 23490819 - 23490753
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    |||||||||||  ||||||| ||| || ||||||||||| |||  |||||||||||||| |||||||    
T  23490819 gttacccgtcccatacccgtgtttcgagatcggggaaaacccatacccatacccaaacccagtcaaa 23490753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 51421899 - 51421965
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    |||||||||||  ||||||| |||||| |||||| |||| |||  |||||||||||||| |||||||    
T  51421899 gttacccgtcccatacccgtgttttgagatcgggaaaaacccatacccatacccaaacccagtcaaa 51421965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 23968621 - 23968678
Alignment:
Q  21 ttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacc 78  Q
    ||||||||||  ||||||| |||||||| ||||||||| |||  ||||||||||||||    
T  23968621 ttacccgtcccatacccgtgttttgaaaccggggaaaacccatacccatacccaaacc 23968678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 24236796 - 24236735
Alignment:
Q  33 tacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    ||||||| |||||| ||||||||||| |||  |||||||| ||||| ||||||| |||||||    
T  24236796 tacccgtgttttgagatcggggaaaacccatacccatacctaaacccagtcaaaacgggaaa 24236735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 33293578 - 33293521
Alignment:
Q  21 ttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacc 78  Q
    ||||||||||  ||||||| ||||||||||||| |||| |||| | ||||||||||||    
T  33293578 ttacccgtcccatacccgtgttttgaaatcgggaaaaacccaaactcatacccaaacc 33293521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 49250820 - 49250755
Alignment:
Q  21 ttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    ||||||||||  ||||||| |||||| |||||||||||  ||  |||||||||||||| |||||||    
T  49250820 ttacccgtcccatacccgtgttttgagatcggggaaaactcatacccatacccaaacccagtcaaa 49250755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 29871335 - 29871267
Alignment:
Q  18 cagttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    |||||||| ||||  ||||| | |||||||||||| ||||| |||| | ||||||||||| ||||||||    
T  29871335 cagttacctgtcccatacccatgttttgaaatcggagaaaacccaaactcatacccaaacttagtcaaa 29871267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 35936855 - 35936811
Alignment:
Q  42 tttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    ||||||||||||||||| |||| | |||||||||||| |||||||    
T  35936855 tttgaaatcggggaaaacccaaactcatacccaaaccaagtcaaa 35936811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 211404 - 211474
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgg 90  Q
    ||||||||||  ||||||||||||||||||||| ||||| |||| |||||||||||||  |||||||||||    
T  211404 gttacccgtctcgtacccgtattttgaaatcggagaaaacccaaacccatacccaaactcagtcaaatcgg 211474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 2367366 - 2367440
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||||||||||  ||||||| |||||| ||||||||||| |||  |||||||||||||||||||||| |||||||    
T  2367366 gttacccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacctagtcaaaacgggaaa 2367440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 20611030 - 20610956
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||||||||||  |||||||||||||||||||||||||  |||| |||||||| ||||| ||| |||||||||||    
T  20611030 gttacccgtcccctacccgtattttgaaatcggggaaaccccaaacccatacctaaacccagttaaatcgggaaa 20610956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 28079744 - 28079668
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaata 96  Q
    ||||||||||| |||||| | |||||||||||||||||| |||| |||||||||||||  || |||| |||||||||    
T  28079744 gttacccgtcccgtacccatgttttgaaatcggggaaaacccaaacccatacccaaactcagccaaagcgggaaata 28079668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 29199933 - 29199885
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagccca 68  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  29199933 gttacccgtcccgtacccgtattttgaaatcggggaaaatccaaaccca 29199885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 5863431 - 5863360
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||||| |||||||||||||||||| |||  |||||||||||||| ||||||| ||||    
T  5863431 gttacccgtcccatacccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaacggg 5863360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 9458898 - 9458969
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    ||||||| ||| ||||||||||| | ||||||||||||| |||  |||||||||||||| ||||||||||||    
T  9458898 gttacccatcccgtacccgtattattaaatcggggaaaacccagacccatacccaaacccagtcaaatcggg 9458969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 27738812 - 27738886
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||||||||||  ||||||| |||||||||||||||||| |||  |||||||| ||||| ||||||| |||||||    
T  27738812 gttacccgtcccatacccgtgttttgaaatcggggaaaacccatacccatacctaaacccagtcaaaacgggaaa 27738886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 18908933 - 18909007
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||||||||||  || ||||||||||||||||||||||| |||| | ||||| |||||  ||||| |||||||||    
T  18908933 gttacccgtcccatatccgtattttgaaatcggggaaaacccaaactcatactcaaactcagtcacatcgggaaa 18909007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 10188126 - 10188057
Alignment:
Q  22 tacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||  ||||||| |||||| ||||||||||| |||  |||||||||||||| ||||||| ||||    
T  10188126 tacccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacccagtcaaaacggg 10188057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 9458710 - 9458774
Alignment:
Q  27 gtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||| |||||||||||||||||| |||||||   ||| | |||||||||||| ||||||||||||    
T  9458710 gtcccgtacccgtattttgaaattggggaaatctcaaactcatacccaaacccagtcaaatcggg 9458774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 30986293 - 30986364
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||||| |||||| ||||||||||| |||  |||||||||||||  ||||||| ||||    
T  30986293 gttacccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaactcagtcaaaacggg 30986364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 10142566 - 10142500
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    |||||| ||||  ||||||| |||||| ||||||||||| |||  |||||||||||||| |||||||    
T  10142566 gttacctgtcccatacccgttttttgagatcggggaaaacccatacccatacccaaacccagtcaaa 10142500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 24225738 - 24225796
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacc 78  Q
    |||||||||||  || |||| |||||| |||||||||||||||  ||||||||||||||    
T  24225738 gttacccgtcccatatccgtgttttgagatcggggaaaatccatacccatacccaaacc 24225796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 32853884 - 32853950
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    |||||||||||  ||||||| |||||| ||||||||||| |||  |||||| ||||||| |||||||    
T  32853884 gttacccgtcccatacccgtgttttgagatcggggaaaacccatacccataaccaaacccagtcaaa 32853950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 20349104 - 20349161
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaac 77  Q
    ||||| |||||  ||||||| ||||||||||||||||||||||| | |||||| ||||    
T  20349104 gttactcgtcccatacccgtgttttgaaatcggggaaaatccaaactcataccaaaac 20349161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 14605974 - 14605904
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgg 90  Q
    ||||||||||  ||||||||||||||||||||| ||||| |||| |||||||||||||  |||||||||||    
T  14605974 gttacccgtctcgtacccgtattttgaaatcggagaaaacccaaacccatacccaaactcagtcaaatcgg 14605904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 41915045 - 41914974
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    ||||||| ||| |||||| |||||||||||||||||||| |||| | ||||||| |||| ||||||||||||    
T  41915045 gttacccttcccgtacccatattttgaaatcggggaaaacccaaactcatacccgaacccagtcaaatcggg 41914974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 47103784 - 47103855
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||| || |||||||||||||||||| |||||||| |||| |||||||  ||||| ||||||||||||    
T  47103784 gttacccgccccgtacccgtattttgaaattggggaaaacccaaacccatacaaaaacccagtcaaatcggg 47103855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 1866597 - 1866527
Alignment:
Q  21 ttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||  |||||||||||||||||||||| |||| |||  | |||||||| ||||||||||||||||    
T  1866597 ttacccgtctcgtacccgtattttgaaatcgggaaaaacccatactcatacccagacctagtcaaatcggg 1866527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 36 - 94
Target Start/End: Complemental strand, 7334230 - 7334172
Alignment:
Q  36 ccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||| |||||||||||||||||||||||  ||||||||||||| ||||||| |||||||    
T  7334230 ccgtgttttgaaatcggggaaaatccaaatccatacccaaacccagtcaaagcgggaaa 7334172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 30673012 - 30673075
Alignment:
Q  25 ccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatc 88  Q
    |||||| ||||||||||||| ||||||| |||||||||| | |||||||||||| | |||||||    
T  30673012 ccgtcccgtacccgtattttaaaatcggagaaaatccaaactcatacccaaacccaatcaaatc 30673075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 31415968 - 31415909
Alignment:
Q  32 gtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    ||||||||||||||||||||| |||||||||| |  ||||| ||||| ||||||||||||    
T  31415968 gtacccgtattttgaaatcggagaaaatccaaacttatacctaaacccagtcaaatcggg 31415909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 45065295 - 45065362
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaat 87  Q
    ||||| ||||| |||||||||||||||||||| |||||| | || || ||||||||||| ||||||||    
T  45065295 gttactcgtcccgtacccgtattttgaaatcgaggaaaacctaaacctatacccaaacccagtcaaat 45065362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 39375324 - 39375390
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    |||||||||||  |||||||||||||||||||||||||| |||| | |||| ||||||  |||||||    
T  39375324 gttacccgtcctatacccgtattttgaaatcggggaaaagccaaactcatatccaaactcagtcaaa 39375390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 15733580 - 15733504
Alignment:
Q  15 tctcagttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||| ||||||||||  |||||||||||||||||||| ||||||  ||   ||||||||||||||| | ||||||||    
T  15733580 tctccgttacccgtctcgtacccgtattttgaaatcgaggaaaactcatatccatacccaaacctaataaaatcggg 15733504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 6382321 - 6382250
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||||| |||||| ||||| ||||| |||  |||||||||||||| ||||||| ||||    
T  6382321 gttacccgtcccatacccgtgttttgagatcggagaaaacccatacccatacccaaacccagtcaaagcggg 6382250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 10302130 - 10302201
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    ||||||||||   |||||||| ||||||||||||||||| | || |||||||||||||| | ||||| ||||    
T  10302130 gttacccgtctcatacccgtactttgaaatcggggaaaacctaaacccatacccaaacccaatcaaaacggg 10302201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 11173020 - 11173067
Alignment:
Q  21 ttacccgtccggtacccgtattttgaaatcggggaaaatccaagccca 68  Q
    ||||| |||| ||||||||||||||||||||||||||| |||| ||||    
T  11173020 ttacctgtcccgtacccgtattttgaaatcggggaaaacccaaaccca 11173067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 21544626 - 21544673
Alignment:
Q  21 ttacccgtccggtacccgtattttgaaatcggggaaaatccaagccca 68  Q
    ||||| |||| |||||||||||||||||||||| ||||||||| ||||    
T  21544626 ttacctgtcccgtacccgtattttgaaatcgggaaaaatccaaaccca 21544673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 29527858 - 29527901
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaa 63  Q
    ||||||||||  ||||||||||||||||||||||||||| ||||    
T  29527858 gttacccgtcacgtacccgtattttgaaatcggggaaaacccaa 29527901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 44317581 - 44317652
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||||| ||| || ||||||||||| |||  |||||||||||||| ||||||| ||||    
T  44317581 gttacccgtcccatacccgtgtttcgagatcggggaaaacccatacccatacccaaacccagtcaaaacggg 44317652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 50684508 - 50684571
Alignment:
Q  15 tctcagttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacc 78  Q
    |||| ||||||||||| ||| ||||||||| ||||||||| ||| |||||| ||||| ||||||    
T  50684508 tctccgttacccgtcccgtatccgtattttaaaatcggggtaaacccaagctcatactcaaacc 50684571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 11028119 - 11028185
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    |||||||||||  ||||||| |||||| ||||||||||| |||  |||||||||||| | |||||||    
T  11028119 gttacccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaatccagtcaaa 11028185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 37349171 - 37349229
Alignment:
Q  33 tacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    ||||||| ||||||||||||||||||  ||| | |||||||||||| ||||||| ||||    
T  37349171 tacccgtgttttgaaatcggggaaaactcaaactcatacccaaacccagtcaaaacggg 37349229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 43309529 - 43309595
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    |||||||||||  ||||||| ||||||||||||| |||| |||| | ||||| |||||| |||||||    
T  43309529 gttacccgtcccatacccgtgttttgaaatcgggaaaaacccaaactcatactcaaacccagtcaaa 43309595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 1724297 - 1724252
Alignment:
Q  41 ttttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    ||||||||||||| |||| |||| |||||||||||||| |||||||    
T  1724297 ttttgaaatcgggaaaaacccaaacccatacccaaacccagtcaaa 1724252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 19548985 - 19548920
Alignment:
Q  21 ttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    |||||||||| ||||| || |||||||||||||||||| ||    ||||||||||||| |||||||    
T  19548985 ttacccgtcccgtacctgtgttttgaaatcggggaaaacccttatccatacccaaacccagtcaaa 19548920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 1724359 - 1724307
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacc 72  Q
    |||||||||||  ||||| | |||||||||||||||||| |||| ||||||||    
T  1724359 gttacccgtcccatacccatgttttgaaatcggggaaaacccaaacccatacc 1724307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 10574468 - 10574420
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagccca 68  Q
    ||||||||||| ||||| ||||| |||||||||||||||| ||| ||||    
T  10574468 gttacccgtcccgtacctgtattatgaaatcggggaaaattcaaaccca 10574420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 31782671 - 31782707
Alignment:
Q  32 gtacccgtattttgaaatcggggaaaatccaagccca 68  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  31782671 gtacccgtattttgaaatcggggaaaacccaaaccca 31782707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 4016092 - 4016018
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||| ||||||  ||||| | |||||||||||||||||| |||| |||||||||||||||||||||| |||||||    
T  4016092 gttatccgtcccatacccatgttttgaaatcggggaaaacccaaacccatacccaaacctagtcaaaacgggaaa 4016018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 2490346 - 2490415
Alignment:
Q  21 ttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgg 90  Q
    |||||||| | |||||||||||||||||||||||||||  ||| |||||| ||||||| |||||||||||    
T  2490346 ttacccgttctgtacccgtattttgaaatcggggaaaactcaaacccatatccaaacccagtcaaatcgg 2490415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 48390865 - 48390794
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||||| |||||||||||||||||| |||  |||||||||||||| ||||||| ||||    
T  48390865 gttacccgtcccatacccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaacggg 48390794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 4557353 - 4557279
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||||||||||  ||||| | |||||||| ||||||||| |||| |||||||||||||| ||||||| |||||||    
T  4557353 gttacccgtcccatacccatgttttgaaaacggggaaaacccaaacccatacccaaacccagtcaaaacgggaaa 4557279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 6738440 - 6738379
Alignment:
Q  33 tacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    ||||||| |||||||||||||||||| |||  |||||||||||||| ||||||| |||||||    
T  6738440 tacccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaacgggaaa 6738379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 35687541 - 35687470
Alignment:
Q  18 cagttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcg 89  Q
    ||||||||||||  ||||||||||| |||||||||||||||  ||| | ||||| |||||| ||||||||||    
T  35687541 cagttacccgtctcgtacccgtattatgaaatcggggaaaactcaaactcatactcaaacccagtcaaatcg 35687470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 49580104 - 49580175
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||||| |||||| ||||||||||| |||  |||||||||||||| ||||||| ||||    
T  49580104 gttacccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacccagtcaaaacggg 49580175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 34025994 - 34026068
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||||||||||  |||| || |||||||||||||||||| |||  |||||| ||||||| ||||||| |||||||    
T  34025994 gttacccgtcccatacctgtgttttgaaatcggggaaaacccatacccatatccaaacccagtcaaaacgggaaa 34026068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 39655321 - 39655250
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||||| |||||| ||||||||||| |||  |||||||||||||| | ||||| ||||    
T  39655321 gttacccgtcccatacccgtgttttgagatcggggaaaacccatacccatacccaaacccaatcaaaacggg 39655250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 44953483 - 44953412
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||||| |||||| ||||||||||| |||  |||| ||||||||| ||||||| ||||    
T  44953483 gttacccgtcccatacccgtgttttgagatcggggaaaacccatacccaaacccaaacccagtcaaaacggg 44953412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 10043330 - 10043264
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    |||||||||||  ||||| | |||||||| | ||||||| |||| |||||||||||||| |||||||    
T  10043330 gttacccgtcccatacccatgttttgaaaccagggaaaacccaaacccatacccaaacccagtcaaa 10043264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 30616329 - 30616255
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||||||||||  || |||| |||||||||||||||||| |||| ||||||| ||||   ||||||| |||||||    
T  30616329 gttacccgtcccatatccgtgttttgaaatcggggaaaacccaaacccatactcaaattcagtcaaaacgggaaa 30616255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 44172666 - 44172732
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    |||||||||||  ||||||| |||||| ||||||||||| |||  ||||||| |||||| |||||||    
T  44172666 gttacccgtcccatacccgtgttttgagatcggggaaaacccatacccatactcaaacccagtcaaa 44172732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 44179366 - 44179432
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    |||||||||||  ||||||| |||||| ||||||||||| |||  ||||||| |||||| |||||||    
T  44179366 gttacccgtcccatacccgtgttttgagatcggggaaaacccatacccatactcaaacccagtcaaa 44179432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 20087050 - 20087103
Alignment:
Q  33 tacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    ||||||| |||||||||||||||||| |||  |||||| ||||||| |||||||    
T  20087050 tacccgtgttttgaaatcggggaaaacccatacccatatccaaacccagtcaaa 20087103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 37472807 - 37472736
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||||| ||||||||||||||||||||||  | |||||||||||| ||||||| ||||    
T  37472807 gttacccgtcccatacccgtgttttgaaatcggggaaaatccatactcatacccaaacccagtcaaaacggg 37472736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 44057925 - 44057991
Alignment:
Q  21 ttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaat 87  Q
    |||||||||| ||||| ||||||||||||| |||||||||||| | | |||||||||| ||||||||    
T  44057925 ttacccgtcccgtaccggtattttgaaatcagggaaaatccaaactcgtacccaaacccagtcaaat 44057991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 37106733 - 37106804
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||||| |||||||||||||||||| |||  |||||||||||||  ||||||| ||||    
T  37106733 gttacccgtcccatacccgtgttttgaaatcggggaaaacccatacccatacccaaactcagtcaaaacggg 37106804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 43371594 - 43371661
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaat 87  Q
    ||||||||||| ||||||||||||| |||||||||||||  ||| || ||||||||||  ||||||||    
T  43371594 gttacccgtcccgtacccgtattttaaaatcggggaaaactcaaaccaatacccaaactcagtcaaat 43371661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 26755787 - 26755855
Alignment:
Q  26 cgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcgggaaa 94  Q
    |||||| ||||| |||||| ||||||  ||||| |||| | |||||||||||| |||||||||||||||    
T  26755787 cgtccgatacccatattttaaaatcgaagaaaacccaaactcatacccaaacccagtcaaatcgggaaa 26755855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 7314696 - 7314625
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||| |||||||| ||||||||||||| |||  |||||| ||||||| ||||||| ||||    
T  7314696 gttacccgtcccatactcgtattttaaaatcggggaaaacccatacccatatccaaacccagtcaaaacggg 7314625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 15546785 - 15546856
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||||| |||||||||||||||||| |||| ||||| |||| | | ||||||| ||||    
T  15546785 gttacccgtcccatacccgtgttttgaaatcggggaaaacccaaacccatgcccagatccagtcaaagcggg 15546856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 30846987 - 30847058
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcggg 91  Q
    |||||||||||  ||||||| ||| || ||||||||||| |||  |||||||||||||| ||||||| ||||    
T  30846987 gttacccgtcccatacccgtgtttcgagatcggggaaaacccatacccatacccaaacccagtcaaaacggg 30847058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 38342567 - 38342500
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaat 87  Q
    ||||||||||| ||| ||||||||| |||||||||||||  ||| |||||| ||||||| | ||||||    
T  38342567 gttacccgtcccgtatccgtattttaaaatcggggaaaactcaaacccatatccaaacccaatcaaat 38342500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 3547202 - 3547260
Alignment:
Q  15 tctcagttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccataccc 73  Q
    |||| ||||||||||| |||||||||||||||||||||  |||| ||||  ||||||||    
T  3547202 tctccgttacccgtcccgtacccgtattttgaaatcggtaaaaacccaaatccataccc 3547260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 22900835 - 22900901
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaa 86  Q
    ||||| |||||  ||||||| ||||||||||||| |||| |||| |||||||||| ||| |||||||    
T  22900835 gttactcgtcccatacccgtgttttgaaatcgggaaaaacccaaacccatacccagaccaagtcaaa 22900901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 40442584 - 40442544
Alignment:
Q  221 tggttcttcacataaaattcacattttgtggttataacaaa 261  Q
    |||||||||||||||||||||  || |||||||||||||||    
T  40442584 tggttcttcacataaaattcattttgtgtggttataacaaa 40442544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 40503741 - 40503701
Alignment:
Q  221 tggttcttcacataaaattcacattttgtggttataacaaa 261  Q
    |||||||||||||||||||||  || |||||||||||||||    
T  40503741 tggttcttcacataaaattcattttgtgtggttataacaaa 40503701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 33433 - 33491
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacc 78  Q
    |||||||||||  ||||||| |||||||||||||||||| |||| ||||||||||||||    
T  33433 gttacccgtcccatacccgtgttttgaaatcggggaaaacccaaacccatacccaaacc 33491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 105517 - 105448
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacctagtcaaatcg 89  Q
    ||||||||||| |||||||||||  ||||||||  ||||||||| ||||||| |||||| | ||||||||    
T  105517 gttacccgtcccgtacccgtattaagaaatcggaaaaaatccaatcccatactcaaacccaatcaaatcg 105448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 70135 - 70193
Alignment:
Q  20 gttacccgtccggtacccgtattttgaaatcggggaaaatccaagcccatacccaaacc 78  Q
    ||||||||||| ||||||||||| ||||||| || ||||||||| | ||||| ||||||    
T  70135 gttacccgtcccgtacccgtattatgaaatcaggaaaaatccaaactcatactcaaacc 70193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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