View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_low_20 (Length: 347)
Name: NF2532_low_20
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 4 - 278
Target Start/End: Complemental strand, 30116358 - 30116083
Alignment:
| Q |
4 |
atggacatcatcatccattttgcagaaagtgacttttctacaaacaaatcacactctgcatcgctatatacataccctt-attaccttccatatccaagc |
102 |
Q |
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| T |
30116358 |
atggacatcttcatccattttgcagaaagtgacttttctacaaacaaatcacactctgcatcgctatatacataccctttattaccttccatatccaagc |
30116259 |
T |
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| Q |
103 |
atatccctcaaaccaagttacatatatactattgtttcaactttcacttgatacttgtattcaatttcaattacaaaacccaatatcatttatttcgtag |
202 |
Q |
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| T |
30116258 |
atatccctcaaaccaagttacatatatactattgtttcaactttcacttgatacttgtattcaatttcaattacaaaactcaatatcatttatttcgtag |
30116159 |
T |
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| Q |
203 |
catgtgatcaccatattctataaatccataaggtactagcatgtgatcaccgtatttttaacgagtattgatttta |
278 |
Q |
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| T |
30116158 |
catgtgatcaccatattctataaatccataaggtactagcatgtgatcaccgtatttttaatgagtattgatttta |
30116083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 30115360 - 30115299
Alignment:
| Q |
270 |
ttgattttaaagcacccattttttctactcttgcaacaacttgtttgatcttattaaaaaat |
331 |
Q |
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| T |
30115360 |
ttgattttaaagcacccattttttctactcttgcaacaacttgtttgatcttattaaaaaat |
30115299 |
T |
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