View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_low_26 (Length: 293)
Name: NF2532_low_26
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 276
Target Start/End: Complemental strand, 7583966 - 7583705
Alignment:
| Q |
14 |
ataatacttgagatatagagcttctccaaggaaaacttatgttgttgaatcttgtctggttccttgcaaaccaaataacactaaagatgttaattagagt |
113 |
Q |
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| T |
7583966 |
ataatacttgagata--gagcttctccaaggaaaacttatgttgttgaatcttgtctggttccttgcaaactaaataacactaaagatgttaattagagc |
7583869 |
T |
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| Q |
114 |
aacagtgatcactagcttaccttgaggat-tggatggtttctgacatatggaccagatgtcatctctagattggaaatggaggttacaattaagaatgga |
212 |
Q |
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| T |
7583868 |
agcagtgatcactagcttaccttgaggatctggatggtttctgacatatagaccagatgtcatctctatattggaaatggaggttacaattaagaatgga |
7583769 |
T |
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| Q |
213 |
agcaaaccatctccaaattttgacagcatatcaacattcaaagaaaaggtgaaaagaagattct |
276 |
Q |
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| T |
7583768 |
agcaaaccatctccaaattttgatagcatatcaacattcaaagaaaaggtgaaaagaagattct |
7583705 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 7956531 - 7956575
Alignment:
| Q |
160 |
atggaccagatgtcatctctagattggaaatggaggttacaatta |
204 |
Q |
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| T |
7956531 |
atggaccaaatatcatctctagattggaattggagattacaatta |
7956575 |
T |
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