View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2532_low_27 (Length: 289)
Name: NF2532_low_27
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_low_27 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 45 - 279
Target Start/End: Complemental strand, 2032931 - 2032697
Alignment:
| Q |
45 |
cttctgtatcctgttcataaaaccttttcaccccatctttcaactcctcaagaacactcaaagggattccatgattaacaacttggaaaaaaccccaagt |
144 |
Q |
| |
|
||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2032931 |
cttctgtatcctgttcataaaacctcttgacaccatctttcaactcctcaagaacactcaaagggattccatgattaacaacttggaaaaaaccccaagt |
2032832 |
T |
|
| Q |
145 |
ttcacatgcttccttgatattctcaactatcccttggtgaatacttggatctttattatcaatatctttaaggtctatgacaggaataacatggcttgtg |
244 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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|
| T |
2032831 |
ttcacatgcttccttgatattgtcaactatcccttggtgaatacttggatctttattatcaatatctttaaggtctatgacaggaatagcatggctcatg |
2032732 |
T |
|
| Q |
245 |
ttgtaggctatctcatatttgtcaggttgatgatg |
279 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||| |
|
|
| T |
2032731 |
ttgttggctttctcatatttgtcaggttgatgatg |
2032697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 2050216 - 2049938
Alignment:
| Q |
1 |
aacaaaggatctattcatatctcttgtatacaaacnnnnnnnggcttctgtatcctgttcataaaaccttttcaccccatctttcaactcctcaagaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2050216 |
aacaaaggatctattcatatctcttgtatacaaactttttttggcttctgtagcctgttcataaaaccttttcaccccatctttcaactcctcaagaaca |
2050117 |
T |
|
| Q |
101 |
ctcaaagggattccatgattaacaacttggaaaaaaccccaagtttcacatgcttccttgatattctcaactatcccttggtgaatacttggatctttat |
200 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || || || ||||| |||||||| || |||| || |
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|
| T |
2050116 |
ctcaaagggattccatgattaacaacctgaaaaaaaccccaagtttcacatgcttccttgatattgtcgacaattccttgatgaatactagggtcttgat |
2050017 |
T |
|
| Q |
201 |
tatcaatatctttaaggtctatgacaggaataacatggcttgtgttgtaggctatctcatatttgtcaggttgatgatg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| |
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|
| T |
2050016 |
tatcaatatctttaaggtctatgacaggaataacatggcttgtgttgttggcttcctcatatttgtctggttgatgatg |
2049938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 4 - 279
Target Start/End: Complemental strand, 2054219 - 2053944
Alignment:
| Q |
4 |
aaaggatctattcatatctcttgtatacaaacnnnnnnnggcttctgtatcctgttcataaaaccttttcaccccatctttcaactcctcaagaacactc |
103 |
Q |
| |
|
||||||||| | ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
2054219 |
aaaggatctctgcatatctcttgtatagaaactttttttggcttctgtatcctgttcataaaaccttttcaccccatcattcaactcctcaagaacactc |
2054120 |
T |
|
| Q |
104 |
aaagggattccatgattaacaacttggaaaaaaccccaagtttcacatgcttccttgatattctcaactatcccttggtgaatacttggatctttattat |
203 |
Q |
| |
|
||||||||||||||||||||||| || |||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2054119 |
aaagggattccatgattaacaacctgaaaaaaacctaatgtttcacatgcttccttgactttctcaactatcccttggtgaatacttggatctttattat |
2054020 |
T |
|
| Q |
204 |
caatatctttaaggtctatgacaggaataacatggcttgtgttgtaggctatctcatatttgtcaggttgatgatg |
279 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||| |||||| |||| |||||||||||||||||| ||||||||||| |
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|
| T |
2054019 |
caatatcatcaaggtctataacaggaataacattgcttgtattgttggctatctcatatttgtctggttgatgatg |
2053944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 59 - 279
Target Start/End: Original strand, 1950615 - 1950835
Alignment:
| Q |
59 |
tcataaaaccttttcaccccatctttcaactcctcaagaacactcaaagggattccatgattaacaacttggaaaaaaccccaagtttcacatgcttcct |
158 |
Q |
| |
|
|||| |||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| |
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|
| T |
1950615 |
tcatgaaacctcttcacaccatccttcatctcctcaagaacactcaaagggattccatgattaacaacctgaaaaaacccccaagtttcacatgcttcct |
1950714 |
T |
|
| Q |
159 |
tgatattctcaactatcccttggtgaatacttggatctttattatcaatatctttaaggtctatgacaggaataacatggcttgtgttgtaggctatctc |
258 |
Q |
| |
|
|||| || |||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1950715 |
tgattttgccaacaatcccttgatgaatacttggatctttgttatcaatatctttaaggtctatgacaggaataacatggcttgtgttgtaggctatctc |
1950814 |
T |
|
| Q |
259 |
atatttgtcaggttgatgatg |
279 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1950815 |
atatttgtcaggttgatgatg |
1950835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 2037023 - 2036757
Alignment:
| Q |
8 |
gatctattcatatctcttgtatacaaacnnnnnnnggcttctgtatcctgttcataaaaccttttcaccccatctttcaactcctcaagaacactcaaag |
107 |
Q |
| |
|
||||||||||||||||||||||| ||| | ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2037023 |
gatctattcatatctcttgtataaaaatcttttttgacttctgtgtcttgttcataaaaccttttcaccccatctttcaactcctcaagaacactcaaag |
2036924 |
T |
|
| Q |
108 |
ggattccatgattaacaacttggaaaaaaccccaagtttcacatgcttccttgatattctcaactatcccttggtgaatacttggatctttattatcaat |
207 |
Q |
| |
|
||||||||||||||||||| || |||||||| | |||||||||||||||||||| || |||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
2036923 |
ggattccatgattaacaacctgaaaaaaacctaatgtttcacatgcttccttgattttgccaacaatcccttggtaaatacttggatctttattatcaat |
2036824 |
T |
|
| Q |
208 |
atctttaaggtctatgacaggaataacatggcttgtgttgtaggctatctcatatttgtcaggttga |
274 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||| |
|
|
| T |
2036823 |
atctacaagatctatgacaggaataacatggcttgtgttgttggctttctcgtatttgtcaggttga |
2036757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 59 - 279
Target Start/End: Complemental strand, 2028381 - 2028161
Alignment:
| Q |
59 |
tcataaaaccttttcaccccatctttcaactcctcaagaacactcaaagggattccatgattaacaacttggaaaaaaccccaagtttcacatgcttcct |
158 |
Q |
| |
|
|||| |||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
2028381 |
tcatgaaacctcttcacaccatccttcatctcctcaagaacactcaaagggattccatgattaacaacctgaaaaaacccccaagtttcacatgcttcct |
2028282 |
T |
|
| Q |
159 |
tgatattctcaactatcccttggtgaatacttggatctttattatcaatatctttaaggtctatgacaggaataacatggcttgtgttgtaggctatctc |
258 |
Q |
| |
|
|||| || ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2028281 |
tgattttgctaacaatcccttgatgaatacttggatctttgttatcaatatctttaaggtctatgacaggaataacatggcttgtgttgtaggctatctc |
2028182 |
T |
|
| Q |
259 |
atatttgtcaggttgatgatg |
279 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
2028181 |
atatttgtcaggttgatgatg |
2028161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 2046400 - 2046134
Alignment:
| Q |
8 |
gatctattcatatctcttgtatacaaacnnnnnnnggcttctgtatcctgttcataaaaccttttcaccccatctttcaactcctcaagaacactcaaag |
107 |
Q |
| |
|
||||||||||||||||||||||| ||| | ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2046400 |
gatctattcatatctcttgtataaaaatcttttttgacttctgtgtcttgttcataaaaccttttcaccccatctttcaactcctcaagaacactcaaag |
2046301 |
T |
|
| Q |
108 |
ggattccatgattaacaacttggaaaaaaccccaagtttcacatgcttccttgatattctcaactatcccttggtgaatacttggatctttattatcaat |
207 |
Q |
| |
|
||||||||||||||||||| || |||||||| | |||||||||||||||||||| || |||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
2046300 |
ggattccatgattaacaacctgaaaaaaacctaatgtttcacatgcttccttgattttgccaacaatcccttggtaaatacttggatctttattatcaat |
2046201 |
T |
|
| Q |
208 |
atctttaaggtctatgacaggaataacatggcttgtgttgtaggctatctcatatttgtcaggttga |
274 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
2046200 |
atctacaagatctatgacaggaataacatggcttgtgttgttggctttctggtatttgtcaggttga |
2046134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 45 - 279
Target Start/End: Complemental strand, 10767570 - 10767336
Alignment:
| Q |
45 |
cttctgtatcctgttcataaaaccttttcaccccatctttcaactcctcaagaacactcaaagggattccatgattaacaacttggaaaaaaccccaagt |
144 |
Q |
| |
|
||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |
|
|
| T |
10767570 |
cttctgtatcctgctcataaaacctcttaacaccatctttcaactcctcaagaacactcaaagggattccatgattaacaacttgaaaaaacccccatgt |
10767471 |
T |
|
| Q |
145 |
ttcacatgcttccttgatattctcaactatcccttggtgaatacttggatctttattatcaatatctttaaggtctatgacaggaataacatggcttgtg |
244 |
Q |
| |
|
||||||||||||||| | || ||||| || ||||||||||||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
10767470 |
ttcacatgcttccttcactttgtcaacaattttttggtgaatacttggatctttgttatcaatatctgcaagatctatgataggaataacatggcttgtg |
10767371 |
T |
|
| Q |
245 |
ttgtaggctatctcatatttgtcaggttgatgatg |
279 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||| |
|
|
| T |
10767370 |
ttgtaggctaactcatatttatcaggttgatgatg |
10767336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 77 - 279
Target Start/End: Original strand, 48908894 - 48909096
Alignment:
| Q |
77 |
ccatctttcaactcctcaagaacactcaaagggattccatgattaacaacttggaaaaaaccccaagtttcacatgcttccttgatattctcaactatcc |
176 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||||||| || ||||||||||| |||||||||||||| || | || |||| || |
|
|
| T |
48908894 |
ccatctttcaattcctcaagaatgttcaaagggattccatgattaacaacctgaaaaaaaccccatgtttcacatgcttctttcaatttgtcaataattt |
48908993 |
T |
|
| Q |
177 |
cttggtgaatacttggatctttattatcaatatctttaaggtctatgacaggaataacatggcttgtgttgtaggctatctcatatttgtcaggttgatg |
276 |
Q |
| |
|
|||||||||| |||||||||| |||||||| ||| ||||||||||| ||||| |||||||| |||||||||||||||||| |||||| |||||||| |
|
|
| T |
48908994 |
tttggtgaataattggatctttgttatcaatgtctgcaaggtctatgataggaagaacatggcaattgttgtaggctatctcatttttgtctggttgatg |
48909093 |
T |
|
| Q |
277 |
atg |
279 |
Q |
| |
|
||| |
|
|
| T |
48909094 |
atg |
48909096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 28786317 - 28786385
Alignment:
| Q |
89 |
tcctcaagaacactcaaagggattccatgattaacaacttggaaaaaaccccaagtttcacatgcttcc |
157 |
Q |
| |
|
|||||||||||| ||||||| || |||||||| || ||||| || |||||||| || |||||||||||| |
|
|
| T |
28786317 |
tcctcaagaacattcaaaggaatgccatgattgaccacttgaaagaaaccccatgtctcacatgcttcc |
28786385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 28736745 - 28736832
Alignment:
| Q |
72 |
tcaccccatctttcaactcctcaagaacactcaaagggattccatgattaacaacttggaaaaaaccccaagtttcacatgcttcctt |
159 |
Q |
| |
|
|||| |||||||||| |||||||||||| | | ||| || ||||||||||| ||||| || |||||||| || ||| |||||||||| |
|
|
| T |
28736745 |
tcactccatctttcatatcctcaagaacatttataggaataccatgattaaccacttgaaagaaaccccatgtctcagatgcttcctt |
28736832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 28743371 - 28743458
Alignment:
| Q |
72 |
tcaccccatctttcaactcctcaagaacactcaaagggattccatgattaacaacttggaaaaaaccccaagtttcacatgcttcctt |
159 |
Q |
| |
|
|||| |||||||||| |||||||||||| | | ||| || ||||||||||| ||||| || |||||||| || ||| |||||||||| |
|
|
| T |
28743371 |
tcactccatctttcatatcctcaagaacatttataggaataccatgattaaccacttgaaagaaaccccatgtctcagatgcttcctt |
28743458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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