View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_low_28 (Length: 280)
Name: NF2532_low_28
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 117 - 271
Target Start/End: Complemental strand, 4021188 - 4021034
Alignment:
| Q |
117 |
tctttgattcgctatatcgtttttggaggtaaagcttctttctatctaccacgacttcccaaaacaagttttccatttcaagctttggtatactctgcgc |
216 |
Q |
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| T |
4021188 |
tctttgattcgctatatcgtttttggaggtaaagcttctttctatctaccacgacttcccaaaacaaattttccatttcaagctttggtatactctgcgc |
4021089 |
T |
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| Q |
217 |
aggaagtgttctcatgtgacaacaatataacaattgtgtgctaattgagtattat |
271 |
Q |
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| T |
4021088 |
aggaagtgttctcatgtgacaacaatataacaattgtgtgctaattgggtattat |
4021034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 4021338 - 4021230
Alignment:
| Q |
1 |
ccaaaattttccattccctccaaaactctcaactgcaaaaacccaaaatgaaacgggaaaattttttgcgctcaattatggaaaccctaatgactctaac |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4021338 |
ccaaaaatttccattccctccaaaactctcaactgcaaaaacccaaaatgaaacggtaaaaatttttgcgctcaattatggaaaccctaatgactctaac |
4021239 |
T |
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| Q |
101 |
aaccaccag |
109 |
Q |
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| T |
4021238 |
aaccaccag |
4021230 |
T |
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