View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2532_low_3 (Length: 553)
Name: NF2532_low_3
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 35 - 321
Target Start/End: Complemental strand, 3986005 - 3985719
Alignment:
| Q |
35 |
gaagataaagatggtaattaaggatgaaaactttgataatatacccctggtaactcatagaaaggaacatttgcaatgcttctatagctgaatgaggatg |
134 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3986005 |
gaagatgaagatggtaattaaggatgaaaactttgataatatacccctggtaactcatagaaaggaacatttgcaatgcttctatagctgaatgaggatg |
3985906 |
T |
|
| Q |
135 |
ttttttcattcctaatcactgaacatgatgttttctttgtgtgaaaatgactattaagtctatgcttcttttgtactaataagggttgccaaggaaccac |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3985905 |
ttttttcattcctaatcactgaacatgatgttttctttgtatgaaaatgactattaagtatatgcttcttttgtactaataagggttgccaaggaaccac |
3985806 |
T |
|
| Q |
235 |
actaatgcttgccataatatgattgatgaaatatgaaatatttagctttataacgttttccttctcaataggacaaggtacttatgc |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3985805 |
actaatgcttgccataatatgattgatgaaatatgaaatatttagctttataaagttttccttctcaataggacaaggtacttatgc |
3985719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 444 - 537
Target Start/End: Complemental strand, 3985648 - 3985555
Alignment:
| Q |
444 |
ttatcttataatgctttttgggaaatttcaaatttgtttcttaaagtttcaagattaaactcttgtcattgaattgacatttcatggatatatt |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3985648 |
ttatcttataatgctttttgggaaatttcaaatttgtttcttaaagtttcaagattaaactcttgtcattgaattgacatttcatggatatatt |
3985555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 334 - 380
Target Start/End: Complemental strand, 3985698 - 3985652
Alignment:
| Q |
334 |
gacaataaattaatttatatgcatgtgaaatttatgtttatcattta |
380 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3985698 |
gacaataaattaatttatatacatgtgaaatttatgtttatcattta |
3985652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University