View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_low_30 (Length: 265)
Name: NF2532_low_30
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 26032568 - 26032816
Alignment:
| Q |
1 |
acattgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttatcatcattgtcaaataaacgaccgccggcttcaacatcgtcctc |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26032568 |
acattgtgttgcaaacactataagctttttatatcgtgtcatgcaagttacggttatcatcattgtcaaataaacgaccgccggcttcaacatcgtcctc |
26032667 |
T |
|
| Q |
101 |
caaattactgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttcttccctttttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26032668 |
caaattactgaagtcaatacatagaaatggatccatgaagtcatcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttcttccctttttca |
26032767 |
T |
|
| Q |
201 |
tcaacgaaatttgtctcagacaaatacacacgcctagcatcgtcattgt |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26032768 |
tcaacgaaatttgtctcagacaaatacacacgcctagcatcgtcattgt |
26032816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 38171910 - 38172046
Alignment:
| Q |
3 |
attgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttatcatcattgtcaaataaacgaccgccggcttcaacatcgtcctcca |
102 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38171910 |
attgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatcatcattgtcaaataaacgaccgccggtttcaacatcgtcctcca |
38172009 |
T |
|
| Q |
103 |
aattactgaagtcaatacatagaaatggatccatgaa |
139 |
Q |
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||||||||||||||||||||||| ||||||||||||| |
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| T |
38172010 |
aattactgaagtcaatacatagacatggatccatgaa |
38172046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 204
Target Start/End: Complemental strand, 38181568 - 38181375
Alignment:
| Q |
3 |
attgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttat----catcattgtcaaataaacgaccgccggcttcaacatcgtcc |
98 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38181568 |
attgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatatatcatcattgtcaaataaacgactgccggcttcaacatcgtcc |
38181469 |
T |
|
| Q |
99 |
tccaaattactgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttcttcccttttt |
198 |
Q |
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|||||||||||||||||||| | ||||||||| || ||| |||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
38181468 |
tccaaattactgaagtcaatcaa---------atccatgaaatcatca---aggtttgcttcaacatcgtcctccaatgaaattggcttcttcccttttt |
38181381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 38189563 - 38189756
Alignment:
| Q |
3 |
attgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttat----catcattgtcaaataaacgaccgccggcttcaacatcgtcc |
98 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38189563 |
attgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatatatcatcattgtcaaataaacgactgccggcttcaacatcgtcc |
38189662 |
T |
|
| Q |
99 |
tccaaattactgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttcttcccttttt |
198 |
Q |
| |
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|||||||||||||||||||| | ||||||||| || ||| |||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
38189663 |
tccaaattactgaagtcaatcaa---------atccatgaaatcatca---aggtttgcttcaacatcgtcctccaatgaaattggcttcttcccttttt |
38189750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 38216788 - 38216981
Alignment:
| Q |
3 |
attgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttat----catcattgtcaaataaacgaccgccggcttcaacatcgtcc |
98 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38216788 |
attgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatatatcatcattgtcaaataaacgactgccggcttcaacatcgtcc |
38216887 |
T |
|
| Q |
99 |
tccaaattactgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttcttcccttttt |
198 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| || ||| |||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
38216888 |
tccaaattactgaagtcaatcaa---------atccatgaaatcatca---aggtttgcttcaacatcgtcctccaatgaaattggcttcttcccttttt |
38216975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 3 - 204
Target Start/End: Complemental strand, 38208794 - 38208599
Alignment:
| Q |
3 |
attgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttat----catcattgtcaaataaacgaccgccggcttcaacatcgtcc |
98 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38208794 |
attgtgttgcaaacactataagctttttatatcgtgtcatgcaagttactgttatatatcatcattgtcaaataaacgactgccggcttcaacatcgtcc |
38208695 |
T |
|
| Q |
99 |
tccaaattactgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaac-atc-gtcctccaacgaaataggcttcttcccttt |
196 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| || ||| |||||||||||||| ||| ||||||||| ||||| |||||||||||||| |
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| T |
38208694 |
tccaaattactgaagtcaatcaa---------atccatgaaatcatca---aggtttgcttcaacgatcggtcctccaatgaaattggcttcttcccttt |
38208607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 38456930 - 38456736
Alignment:
| Q |
4 |
ttgtgttgcaaacactataagcttttcatatcgtgtcatgcaagttactgttat------catcattgtcaaataaacgaccgccggcttcaacatcgtc |
97 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
38456930 |
ttgtgttgcaaacaatataagctttttatatcttgtcatgcaagttactgttatatatatcatcattgtcaaataaacgactgccggcttcaacatcgtc |
38456831 |
T |
|
| Q |
98 |
ctccaaattactgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttcttccctttt |
197 |
Q |
| |
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||||||||||||||||||||| | ||||||||| || ||| ||||||||||||| |||||||||||| ||||| ||||||||||| ||| |
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|
| T |
38456830 |
ctccaaattactgaagtcaatcaa---------atccatgaaatcatca---aggtttgcttcaaaatcgtcctccaatgaaattggcttcttcccattt |
38456743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 242
Target Start/End: Original strand, 53350919 - 53351051
Alignment:
| Q |
107 |
actgaagtcaatacatagaaatggatccatgaagtcgtcaaggaggtttgcttcaacatcgtcctccaacgaaataggcttcttccctttttcatcaacg |
206 |
Q |
| |
|
|||||||||||| | ||| | |||||||| ||||| |||||| ||||||||||||||||||| ||| ||||| |||||||| |||||||||||||| |
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| T |
53350919 |
actgaagtcaatcaaaagacacggatccatcaagtcatcaagg---tttgcttcaacatcgtccttcaaagaaattggcttctttcctttttcatcaacc |
53351015 |
T |
|
| Q |
207 |
aaatttgtctcagacaaatacacacgcctagcatcg |
242 |
Q |
| |
|
|||||| |||||| | | |||||| ||||||||| |
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|
| T |
53351016 |
aaatttagctcagaggagtgcacacgactagcatcg |
53351051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 38343391 - 38343324
Alignment:
| Q |
151 |
ggtttgcttcaacatcgtcctccaacgaaataggcttcttccctttttcatcaacgaaatttgtctca |
218 |
Q |
| |
|
||||| ||||||||||| |||| | ||||| ||||||||||||| |||||||| |||||||||||| |
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|
| T |
38343391 |
ggtttacttcaacatcgctctccgaagaaatttgcttcttccctttctcatcaaccaaatttgtctca |
38343324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 38447584 - 38447517
Alignment:
| Q |
151 |
ggtttgcttcaacatcgtcctccaacgaaataggcttcttccctttttcatcaacgaaatttgtctca |
218 |
Q |
| |
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||||| ||||||||||| |||| | ||||| ||||||||||||| |||||||| |||||||||||| |
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| T |
38447584 |
ggtttacttcaacatcgctctccgaagaaatttgcttcttccctttctcatcaaccaaatttgtctca |
38447517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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