View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2532_low_31 (Length: 265)
Name: NF2532_low_31
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_low_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 15651847 - 15651623
Alignment:
| Q |
1 |
atatcttgtttattattatattgcatatatgttcttcttctcaagctccttagaaagtaacatgaattttacaatctgcagtttcctatacgccattatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15651847 |
atatcttgtttattattatattgcatatatgttcttcttctcaagctccttagaaagtaacacgaattttacaatctgcagtt-cctatacgccattatt |
15651749 |
T |
|
| Q |
101 |
cgagcatagtggtgatttggtcaaagatctcaccagtaaatgcaaatttatatactatatcttcgaaattgtttacccctattcttctttgaatgtactt |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15651748 |
cgagcacggtggtgatttggtcaaagatctcaccggtaaatgcaaatttataaactatatcttcgaaattgtttacccctattcttctttgaaagtactt |
15651649 |
T |
|
| Q |
201 |
tgttacacgctattgaaatgaactac |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
15651648 |
tgttacacgctattgaaatgaactac |
15651623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 15620948 - 15620727
Alignment:
| Q |
1 |
atatcttgtttattattatattgcatatatgttcttcttctcaagctccttagaaagtaacatgaattttacaatctgcagtttcctatacgccattatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
15620948 |
atatcttgtttattattatattgcatatatgttcttcttctcaagcaccttagaaagtaacatgaattttacaatctgcagtt-cctatacgccattatt |
15620850 |
T |
|
| Q |
101 |
cgagcatagtggtgatttggtcaaagatctcaccagtaaatgcaaatttatatactatatcttcgaaattgtttacccctattcttctttgaatgtactt |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||||||| ||| || |
|
|
| T |
15620849 |
cgagcacggtggtgatttggtcaaagatctcaccggtaaatgcaaattcataaactatatcttagaaattgtttacctctattcttctttgaaagtattt |
15620750 |
T |
|
| Q |
201 |
tgttacacgctattgaaatgaac |
223 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
15620749 |
tgctacacgctattgaaatgaac |
15620727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 15640780 - 15640557
Alignment:
| Q |
1 |
atatcttgtttattattatattgcatatatgttcttcttctcaagctccttagaaagtaacatgaattttacaatctgcagtttcctatacgccattatt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15640780 |
atatcttgtttattattatatttcatatatgttcttcttctcaagcaccttagaaagtaacatgaattttacaatctgcag-ttcctatacgccattatt |
15640682 |
T |
|
| Q |
101 |
cgagcatagtggtgatttggtcaaag--atctcaccagtaaatgcaaatttatatactatatcttcgaaattgtttacccctattcttctttgaatgtac |
198 |
Q |
| |
|
|||||| |||| ||||||||||||| ||||||| ||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||||||| ||| |
|
|
| T |
15640681 |
cgagcacggtggggatttggtcaaaggtctctcaccggtaaatgcaaattcataaactatatcttagaaattgtttacctctattcttctttgaaagtat |
15640582 |
T |
|
| Q |
199 |
tttgttacacgctattgaaatgaac |
223 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
15640581 |
tttgttacacgctattgaaatgaac |
15640557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 18469247 - 18469303
Alignment:
| Q |
161 |
cttcgaaattgtttacccctattcttctttgaatgtactttgttacacgctattgaa |
217 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| || ||||||||||||| ||||| |
|
|
| T |
18469247 |
cttcgaaattgttaacccaaattcttctttgaaaatattttgttacacgctgttgaa |
18469303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University