View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_low_34 (Length: 249)
Name: NF2532_low_34
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 41658664 - 41658904
Alignment:
| Q |
1 |
acctcacaacatcaggtggtgaattctctttcaaagatttcttctcctcaactggtaattcaaagaactagtggacagaagctttcagatcatcgatgac |
100 |
Q |
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| T |
41658664 |
acctcacaacatcaggtggtgaattctctttcaaagatttcttctcctcaactggtaattcaaagaacttgtggacagaagctttcagatcatcgacggc |
41658763 |
T |
|
| Q |
101 |
attaatgggtatcccatgattcacaatttggaagaaaccccatttagttgcagcactaaaaatggaatcttggacttgtatgtcttcccagtttgtgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41658764 |
attaatgggtatcccatgattcacaatttggaagaaaccccatttagttgcagcactaaaaatggaatcttggacttgtatgtcttcccagtttgtgaaa |
41658863 |
T |
|
| Q |
201 |
tcaatgacgggtattgattgctccgagtcttggagaataat |
241 |
Q |
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| T |
41658864 |
tcaatgatgggtattgattgctccgagtcttggggaataat |
41658904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 143
Target Start/End: Original strand, 13845711 - 13845779
Alignment:
| Q |
75 |
acagaagctttcagatcatcgatgacattaatgggtatcccatgattcacaatttggaagaaaccccat |
143 |
Q |
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| T |
13845711 |
acagaagctttgagatcatcaagaacattaataggcatcccatgattcacaatttggaagaaaccccat |
13845779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 218
Target Start/End: Original strand, 13845792 - 13845824
Alignment:
| Q |
186 |
tcccagtttgtgaaatcaatgacgggtattgat |
218 |
Q |
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| T |
13845792 |
tcccagtttgtgaaatcaatgatgggtattgat |
13845824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 14629990 - 14630209
Alignment:
| Q |
1 |
acctcacaacatcaggtggtgaattctctttcaaagatttcttctcctcaactggtaattcaaagaactagtggacagaagctttcagatcatcgatgac |
100 |
Q |
| |
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|||||||||| ||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| | ||| |
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| T |
14629990 |
acctcacaacttcaggaggtgaattctctttcacagatttcttctcttcaactggtaattcaaagaacttgtggacagaagctttcaaatcatcaaggac |
14630089 |
T |
|
| Q |
101 |
attaatgggtatcccatgattcacaatttggaagaaaccccatttagttgcagcactaaaaatggaatcttggacttgtatgtcttcccagtttgtgaaa |
200 |
Q |
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|
||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| || | | ||| ||||||||||||||| |
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| T |
14630090 |
gttaatgggtataccatgattcacaatttggaagaaacccaaattagttgcagcactaaaaattgaatcttgaacatctgggtcatcccagtttgtgaaa |
14630189 |
T |
|
| Q |
201 |
tcaatgacgggtattgattg |
220 |
Q |
| |
|
||||||| |||||||||||| |
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| T |
14630190 |
tcaatgatgggtattgattg |
14630209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 14645058 - 14645274
Alignment:
| Q |
1 |
acctcacaacatcaggtggtgaattctctttcaaagatttcttctcctcaactggtaattcaaagaactagtggacagaagctttcagatcatcgatgac |
100 |
Q |
| |
|
|||||||||| ||||||||||||| |||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| | ||| |
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| T |
14645058 |
acctcacaacttcaggtggtgaat---ctttcacagatttcttctcttcaactggtaattcaaagaacttgtggacagaagctttcaaatcatcaaggac |
14645154 |
T |
|
| Q |
101 |
attaatgggtatcccatgattcacaatttggaagaaaccccatttagttgcagcactaaaaatggaatcttggacttgtatgtcttcccagtttgtgaaa |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| || | | ||| ||||||||||||||| |
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| T |
14645155 |
gttaatgggtataccatgattcacaatttggaagaaacccaacttagttgcagcactaaaaattgaatcttgaacatctgggtcatcccagtttgtgaaa |
14645254 |
T |
|
| Q |
201 |
tcaatgacgggtattgattg |
220 |
Q |
| |
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||||||| |||||||||||| |
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| T |
14645255 |
tcaatgatgggtattgattg |
14645274 |
T |
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