View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2532_low_4 (Length: 533)
Name: NF2532_low_4
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_low_4 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Original strand, 45596767 - 45597285
Alignment:
| Q |
1 |
agttggaacaaacttgtccatattatcgacaaacacaacttgttccaagttgcaacccagtaatcaacacgtctcaaaccaattaagataaagtttgacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45596767 |
agttggaacaaacttgtccatattatcgacaaacacaacttgttccaagttgcaacccagtaatcaacacgtctcaaaccaattaagataaagtttgacc |
45596866 |
T |
|
| Q |
101 |
caattcacaataattnnnnnnnntaaaataaggtttcattatgtgacctgataacataatcaaattaaggcaagcttcttacaaaattttctcttagaaa |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45596867 |
caattcacaataattaaaaaaa-taaaataaggtttcattatgtgacctgataacataatcaaattaaggcaagcttcttacaaaa-------------a |
45596952 |
T |
|
| Q |
201 |
tgatagaacgcagcatgaatggaaataataaacagaaaactattggtttcaaactaagaactactttttatcactacctacacctaaggtaatcatggtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45596953 |
tgatagaacgcagcatgaatggaaataataaacagaaaactattggtttcaaactaagaactactttttatcactacctacacctaaggtaatcatggtt |
45597052 |
T |
|
| Q |
301 |
ttttgttcaataaaaaattcagatcaaaaggcgtcagcacaatagtgtatccgaccagttgacgatgttagcctataccaataccaccagttatattgat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45597053 |
ttttgttcaataaaaaattcagatcaaaaggcgtcagcacaatagtgtatccgaccagttgacgatgttagcctataccaataccaccagttatattgat |
45597152 |
T |
|
| Q |
401 |
tgacctctctatgatcaccttcagaagacaaggtatgtacaaatgcaaagcaaacaaggtcttcattctctcctcaactcaaattcattttgctggttca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45597153 |
tgacctctctatgatcaccttcagaagacaaggtatgtacaaatgcaaagcaaacaaggtcttcattctctcctcaactcaaattcattttgctggttca |
45597252 |
T |
|
| Q |
501 |
ctgcattctcctgtccttggtattgtagaatcc |
533 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
45597253 |
ctgcattctcctgtccttggtattgtagaatcc |
45597285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University