View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_low_40 (Length: 242)
Name: NF2532_low_40
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_low_40 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 51855629 - 51855854
Alignment:
| Q |
1 |
aaggtggacgtgacaaaaaattaagaccttgcagttattaataattctctaggttcctaaatatccagttatggtatttcctatgtctcatttacatgtg |
100 |
Q |
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| T |
51855629 |
aaggtggacgtgacaaaaaattaagaccttgcagttattaataattctctaggttcctaaatatccagttc--gtatttcctatgtctcatttacatgtg |
51855726 |
T |
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| Q |
101 |
atgtg--actaatttcagaatacaattttaccttgccaatatattttttcattaggatttattacatttgcatccagttttacaatttatgataaactat |
198 |
Q |
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| T |
51855727 |
atgtgtgactaatttcagaatacaattttaccttgccaatatattttttcattaggatttattacatttgcatccagttttacaatttatgataaactat |
51855826 |
T |
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| Q |
199 |
taaatttagctcctgtctcttcaataag |
226 |
Q |
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| T |
51855827 |
taaatttagctcctctctcttcaataag |
51855854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 51859158 - 51859288
Alignment:
| Q |
86 |
tctcatttacatgtgatgtgactaatttcagaatacaattttaccttgccaatatattttttcattaggatttattacatttgcatccagttttacaatt |
185 |
Q |
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| T |
51859158 |
tctcatttacatgtgatgtgagtaatttaagaataca----------gccgatatattgtttcattaggatttattacatttgcatccagttttacaaaa |
51859247 |
T |
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| Q |
186 |
tatgataaactattaaatttagctcctgtctcttcaataag |
226 |
Q |
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| T |
51859248 |
tatgataaactattaaatttagctcctctctcttcaataag |
51859288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 51859058 - 51859123
Alignment:
| Q |
15 |
aaaaaattaagaccttgcagttattaataattctctaggttcctaaatatccagttatggtatttccta |
83 |
Q |
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| T |
51859058 |
aaaaaatgaagaccttgcagttattaat---tctctaggttccgaaatatcctcttctggtatttccta |
51859123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 3024 - 3249
Alignment:
| Q |
1 |
aaggtggacgtgacaaaaaattaagaccttgcagttattaataattctctaggttcctaaatatccagttatggtatttcctatgtctcatttacatgtg |
100 |
Q |
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| T |
3024 |
aaggtggacgtgacaaaaaattaagaccttgcagttattaataattctctaggttcctaaatatccagttc--gtatttcctatgtctcatttacatgtg |
3121 |
T |
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| Q |
101 |
atgtg--actaatttcagaatacaattttaccttgccaatatattttttcattaggatttattacatttgcatccagttttacaatttatgataaactat |
198 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3122 |
atgtgtgactaatttcagaatacaattttaccttgccaatatattttttcattaggatttattacatttgcatccagttttacaaaatatgataaactat |
3221 |
T |
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| Q |
199 |
taaatttagctcctgtctcttcaataag |
226 |
Q |
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|||||||||||||| ||||||||||||| |
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| T |
3222 |
taaatttagctcctctctcttcaataag |
3249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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