View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_low_41 (Length: 239)
Name: NF2532_low_41
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_low_41 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 4021549 - 4021327
Alignment:
| Q |
19 |
cgacacaccttctccgaactcacccaattaatcttatttccttccaaaccctctccccaattcattgt--aaatctttatttaagtttaggaggttaaca |
116 |
Q |
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| T |
4021549 |
cgacacaccttctcccaactcacccaattaatcttatttccttccaaaccctctcctcaattcattgtgtaaatctttatttaagtttaggaggttaaca |
4021450 |
T |
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| Q |
117 |
ttatatatgatcttacatgggagaatgccacacctaatttaaatctgttttcatnnnnnnnttccattattacgttggttcctctcaaaagtaatcttaa |
216 |
Q |
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| T |
4021449 |
ttatatatgatcttacatgggagtatgccacacctaattttaatctgttttcataaaaaaattccattattacgttggttcctcccaaaagtaatcttaa |
4021350 |
T |
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| Q |
217 |
ccattttccttccaaaattttcc |
239 |
Q |
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| T |
4021349 |
ccattttccttccaaaaatttcc |
4021327 |
T |
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Target: scaffold0376 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 4938 - 4892
Alignment:
| Q |
29 |
tctccgaactcacccaattaatcttatttccttccaaaccctctccc |
75 |
Q |
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||||| ||||||||||||||||||| ||||||||||| ||| ||||| |
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| T |
4938 |
tctcccaactcacccaattaatcttgtttccttccaatccccctccc |
4892 |
T |
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