View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_low_44 (Length: 233)
Name: NF2532_low_44
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_low_44 |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 46239465 - 46239240
Alignment:
| Q |
8 |
catcatcaactttattccctttatgtgtaagtatcttcactttcatttttctcttaggagtattgctcttcaatggtgattttgaagcacaagtcttaat |
107 |
Q |
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| T |
46239465 |
catcatcaactttattccctttatgtgtaagtatcttcactttcatttttttcttaggagtattgctcttcaatggtgattttgaagcacaagtcttaat |
46239366 |
T |
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| Q |
108 |
cttcaaagacttcccaccaacatctactctattaattccactcacaggtgcatccacttcaacataggcaaacccatcattaagtgcagtagccctctca |
207 |
Q |
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| T |
46239365 |
cctcaaagacttcccaccaacatctactctattagttccactcacaggtgcatccacttcaacataggcaaacccatcattaagtgcagtagccctctca |
46239266 |
T |
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| Q |
208 |
tcctcactgtcatcaaacttcaaacc |
233 |
Q |
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| T |
46239265 |
tcctcactgtcatcaaacttcaaacc |
46239240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 23540776 - 23540629
Alignment:
| Q |
82 |
ggtgattttgaagcacaagtcttaatcttcaaagacttcccaccaacatctactctattaattccactcacaggtgcatccacttcaacataggcaaacc |
181 |
Q |
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|||||||| || ||||| |||| ||| |||||||||| |||||||||| |||||||| | ||| | | ||||| || ||||||||| |||||| |
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| T |
23540776 |
ggtgatttagatgcacacttctttatcctcaaagacttaccaccaacattgactctattgctaccattagctggtgcttcaacttcaacagcttcaaacc |
23540677 |
T |
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| Q |
182 |
catcattaagtgcagtagccctctcatcctcactgtcatcaaacttca |
229 |
Q |
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| T |
23540676 |
catcattaactggagcacccctctcatcctcactgtcatcaaacttca |
23540629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 233
Target Start/End: Original strand, 3438002 - 3438227
Alignment:
| Q |
8 |
catcatcaactttattccctttatgtgtaagtatcttcactttcatttttctcttaggagtattgctcttcaatggtgattttgaagcacaagtcttaat |
107 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3438002 |
catcatcaactttcttccctttatgtgtaagtatcttcactttcatttttttcttaggagtattgctcttcaatggtgattttgaagcacaagtcttaat |
3438101 |
T |
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| Q |
108 |
cttcaaagacttcccaccaacatctactctattaattccactcacaggtgcatccacttcaacataggcaaacccatcattaagtgcagtagccctctca |
207 |
Q |
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| T |
3438102 |
cctcaaagacttcccaccaacatctactctattacttccactcacaggtgcatccacttcaacataggcaaacccatcattaagtgcagtagccctctca |
3438201 |
T |
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| Q |
208 |
tcctcactgtcatcaaacttcaaacc |
233 |
Q |
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|||||||||||||||||||||||||| |
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| T |
3438202 |
tcctcactgtcatcaaacttcaaacc |
3438227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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