View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_low_45 (Length: 230)
Name: NF2532_low_45
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33079087 - 33079318
Alignment:
| Q |
1 |
aatcgttcacaccacgccctctcttctctgactaacctcccctaaataactatgctaattctactgtgccttttggatgccattgaataacttacttcaa |
100 |
Q |
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| T |
33079087 |
aatcgttcacaccacgccctctcttctctgactaacctcccctaaataactatgctaattctactgtgccttttggatgccattgaataacttacttcga |
33079186 |
T |
|
| Q |
101 |
cta----------tctaaccaaacatattcctatcacacatattgaattcaatgtttgtaaactagcattaagaacatgcatatctttatcggaattaag |
190 |
Q |
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| T |
33079187 |
ctagaccctgctatctaaccaaacatattcatatcacacatattgaattcaatgtttgtaaactagcattaagaacatgcatatctttataggaattaag |
33079286 |
T |
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| Q |
191 |
atatgtatgcataattttaatacctgatgatg |
222 |
Q |
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| T |
33079287 |
atatgtatgcataattttaatacctggtgatg |
33079318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 26 - 222
Target Start/End: Original strand, 41518755 - 41518962
Alignment:
| Q |
26 |
ctctgactaacctcccctaaataactatgctaattctactgtgccttttggatgccattgaataacttacttcaact----------atctaaccaaaca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| | | | |||||||||||| |||||| ||| ||||||||| |
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| T |
41518755 |
ctctgactaacctcccctaaataactatgctaattctactatgccttttggtttctaatgaataacttacgtcaactagaccctgccatccaaccaaaca |
41518854 |
T |
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| Q |
116 |
tat-tcctatcacacatattgaattcaatgtttgtaaactagcattaagaacatgcatatctttatcggaattaagatatgtatgcataattttaatacc |
214 |
Q |
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| T |
41518855 |
tttatccgatcacccataatgaattcaatgttcctaaagtagtattcagaccatgcatatctttataggaattaagaaatgtaagcataatttatatacc |
41518954 |
T |
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| Q |
215 |
tgatgatg |
222 |
Q |
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|||||||| |
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| T |
41518955 |
tgatgatg |
41518962 |
T |
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