View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_low_48 (Length: 208)
Name: NF2532_low_48
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_low_48 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 4972962 - 4973170
Alignment:
| Q |
1 |
cttggagtacaggaataagtggacagttgcaaaaagcttttataacaggtactagttcaaatctgtgaatactacaaactagaccttagtcaatgaatta |
100 |
Q |
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| T |
4972962 |
cttggaatacaggaataagtggacagttgcaaaaagcttttataacaggtactagttcaaatctgtgaatactacaaactagaccttagtcaatgaatta |
4973061 |
T |
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| Q |
101 |
tttttatcgttattgtgttgacaacaatgta-nnnnnnncttctgttatgaaatgtaggggttcctaagttgaatagagcagaactagagacagcttgtg |
199 |
Q |
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| T |
4973062 |
tttttatcattattgtgttgacaacaatgtattttttttcttctgttatgaaatgtaggggttcctaagttgaatagagcagaactagagacagcttgtg |
4973161 |
T |
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| Q |
200 |
aggatttca |
208 |
Q |
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||||||||| |
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| T |
4973162 |
aggatttca |
4973170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 4990870 - 4991078
Alignment:
| Q |
1 |
cttggagtacaggaataagtggacagttgcaaaaagcttttataacaggtactagttcaaatctgtgaatactacaaactagaccttagtcaatgaatta |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4990870 |
cttggaatacaggaataagtggacagttgcaaaaagcttttataacaggtactagttcaaatctgtgaatactacaaactagaccttagtcaatgaatta |
4990969 |
T |
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| Q |
101 |
tttttatcgttattgtgttgacaacaatgta-nnnnnnncttctgttatgaaatgtaggggttcctaagttgaatagagcagaactagagacagcttgtg |
199 |
Q |
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| T |
4990970 |
tttttatcattattgtgttgacaacaatgtattttttttcttctgttatgaaatgtaggggttcctaagttgaatagagcagaactagagacagcttgtg |
4991069 |
T |
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| Q |
200 |
aggatttca |
208 |
Q |
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| T |
4991070 |
aggatttca |
4991078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 35833062 - 35833020
Alignment:
| Q |
9 |
acaggaataagtggacagttgcaaaaagcttttataacaggta |
51 |
Q |
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| T |
35833062 |
acaggaataagtggacagttgcagaaagcatttgtaacaggta |
35833020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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