View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2532_low_7 (Length: 468)
Name: NF2532_low_7
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 14 - 452
Target Start/End: Complemental strand, 42159427 - 42158976
Alignment:
| Q |
14 |
ttctacttataggaaactttagtcgctatagacgaagcactttaaaaatcatttcagaaagaaaaaa-------------ctaatctactatatatagta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42159427 |
ttctacttataggaaactttagtcgctatagacgaagcactttaaaaatcatttcagaaagaaaaaaaattatatacatactaatctactatatatagta |
42159328 |
T |
|
| Q |
101 |
agaagatatatatgttatctgtttgagaaactagtttgtaaaatggcatcggtattggcaggggatgaggtgacaatatcaacaagcagtcgtcgtagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42159327 |
agaagatatatatgttatctgtttgagaaactagtttgtaaaatggcatcggtattggcaggggatgaggtgacaatatcaacaagcagtcgtcgtagtt |
42159228 |
T |
|
| Q |
201 |
gggcgtcgacgagtttccgggacgtatggacggcaacagcagcggccattcccgacgtgtttgagcgaagtgatcggcacacacaagaggatgatgagta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42159227 |
gggcgtcgacgagtttccgggacgtatggacggcaacagcagcgtccattcccgacgtgtttgagcgaagtgatcggcacacacaagaggatgatgagta |
42159128 |
T |
|
| Q |
301 |
tcacctcacttgggcagccattgagcggttgcctacttttgagcgtatgagaaaaggtgtagtgaagcatgttggtgaaaatggaaaagttgtgcatgat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42159127 |
tcacctcacttgggcagccattgagcggttgcctacttttgagcgtatgagaaaaggtgtagtgaagcatgttggtgaaaatggaaaagttgtgcatgat |
42159028 |
T |
|
| Q |
401 |
gaagttgatgttgctaaacttggtttacatgataagaagatcttgttggata |
452 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42159027 |
gaagttgatgttgctaaacttggtttacatgataagaagatcttgttggata |
42158976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 118 - 452
Target Start/End: Complemental strand, 42180284 - 42179950
Alignment:
| Q |
118 |
tctgtttgagaaactagtttgtaaaatggcatcggtattggcaggggatgaggtgacaatatcaacaagcagtcgtcgtagttgggcgtcgacgagtttc |
217 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| |||||| ||||| ||||||| |
|
|
| T |
42180284 |
tctgtttgagaaactagttagtaaaatggcatccgtattggcaggggatgaggtgacaatatcaacaagtagtagtcggagttggaagtcgatgagtttc |
42180185 |
T |
|
| Q |
218 |
cgggacgtatggacggcaacagcagcggccattcccgacgtgtttgagcgaagtgatcggcacacacaagaggatgatgagtatcacctcacttgggcag |
317 |
Q |
| |
|
| |||| ||||||| |||||||||| ||| ||||||||||||| ||||| |||||||| |||||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
42180184 |
caggacatatggacagcaacagcaggggcagttcccgacgtgttcgagcggagtgatcgacacacacaggaggatgacgagtatcacctcacctgggcag |
42180085 |
T |
|
| Q |
318 |
ccattgagcggttgcctacttttgagcgtatgagaaaaggtgtagtgaagcatgttggtgaaaatggaaaagttgtgcatgatgaagttgatgttgctaa |
417 |
Q |
| |
|
|||||||||||||||||||||| ||| | ||||||||||||||| |||| || |||| ||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
42180084 |
ccattgagcggttgcctactttagagagaatgagaaaaggtgtaatgaaacacgttgatgaaaatggaaaagttgggcatgatgaagttgatgttgcgaa |
42179985 |
T |
|
| Q |
418 |
acttggtttacatgataagaagatcttgttggata |
452 |
Q |
| |
|
||||||||||||||| || || |||||||||||| |
|
|
| T |
42179984 |
acttggtttacatgacaaaaaactcttgttggata |
42179950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 123 - 452
Target Start/End: Complemental strand, 42146992 - 42146681
Alignment:
| Q |
123 |
ttgagaaactagtttgtaaaatggcatcggtattggcaggggatgaggtgacaatatcaacaagcagtcgtcgtagttgggcgtcgacgagtttccggga |
222 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42146992 |
ttgagaaattagttagtaaaatggcatcggtaatggcaagggatgaggtgacaatatcaacaagcagtcgtcg---------------gagtttccggga |
42146908 |
T |
|
| Q |
223 |
cgtatggacggcaacagcagcggccattcccgacgtgtttgagcgaagtgatcggcacacacaagaggatgatgagtatcacctcacttgggcagccatt |
322 |
Q |
| |
|
| ||| | | |||||||| || ||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42146907 |
gatgtggccagtgacagcagctgc---tccggacgtgttcgagcggagtgatcgacacacacaagaggatgatgagtatcacctcacttgggtagccatt |
42146811 |
T |
|
| Q |
323 |
gagcggttgcctacttttgagcgtatgagaaaaggtgtagtgaagcatgttggtgaaaatggaaaagttgtgcatgatgaagttgatgttgctaaacttg |
422 |
Q |
| |
|
|||||| |||||||||||||| | ||||||||||||||| | || || |||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42146810 |
gagcggctgcctacttttgagagaatgagaaaaggtgtaataaaacacgttgatgaaaatggaaaagttgtgcatgatgaagttgatgttgcgaaacttg |
42146711 |
T |
|
| Q |
423 |
gtttacatgataagaagatcttgttggata |
452 |
Q |
| |
|
|||| ||||| || || |||||||||||| |
|
|
| T |
42146710 |
gttttcatgacaaaaaactcttgttggata |
42146681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University