View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2532_low_8 (Length: 467)

Name: NF2532_low_8
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2532_low_8
NF2532_low_8
[»] chr6 (7 HSPs)
chr6 (5-444)||(8109978-8110409)
chr6 (180-244)||(2146728-2146792)
chr6 (399-450)||(1758254-1758305)
chr6 (209-240)||(33699454-33699485)
chr6 (180-237)||(2725849-2725907)
chr6 (114-144)||(2725877-2725907)
chr6 (105-143)||(33699453-33699491)
[»] chr5 (5 HSPs)
chr5 (164-243)||(37442597-37442676)
chr5 (180-241)||(32303609-32303671)
chr5 (164-241)||(15398344-15398421)
chr5 (207-240)||(34398142-34398175)
chr5 (181-241)||(9828181-9828241)
[»] chr8 (3 HSPs)
chr8 (163-241)||(34363043-34363121)
chr8 (106-144)||(12750293-12750331)
chr8 (115-144)||(38006590-38006619)
[»] chr2 (6 HSPs)
chr2 (163-241)||(33833439-33833517)
chr2 (180-239)||(8513954-8514013)
chr2 (108-144)||(2393897-2393933)
chr2 (113-145)||(8513955-8513987)
chr2 (108-144)||(14994746-14994782)
chr2 (113-145)||(33833482-33833514)
[»] chr4 (9 HSPs)
chr4 (180-241)||(8434238-8434299)
chr4 (164-241)||(959083-959160)
chr4 (105-148)||(42096829-42096872)
chr4 (116-145)||(21027934-21027963)
chr4 (115-144)||(24393615-24393644)
chr4 (108-144)||(24393686-24393722)
chr4 (180-220)||(30097447-30097487)
chr4 (200-236)||(37565998-37566034)
chr4 (187-243)||(37688818-37688874)
[»] chr7 (6 HSPs)
chr7 (179-243)||(46080900-46080964)
chr7 (107-145)||(3756512-3756550)
chr7 (115-144)||(9902195-9902224)
chr7 (108-144)||(16862826-16862862)
chr7 (108-144)||(31756771-31756807)
chr7 (180-244)||(41909365-41909429)
[»] scaffold0254 (1 HSPs)
scaffold0254 (180-244)||(23189-23253)
[»] chr3 (1 HSPs)
chr3 (209-240)||(32535574-32535605)
[»] chr1 (4 HSPs)
chr1 (114-145)||(32827729-32827760)
chr1 (108-145)||(3851819-3851856)
chr1 (200-233)||(32815862-32815895)
chr1 (113-145)||(43908998-43909030)


Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 5 - 444
Target Start/End: Original strand, 8109978 - 8110409
Alignment:
Q  5 aagaagaagaacgatacaaacgattctttcgctgttgtttgccaccagaatttctctgggcttttgggctttattcatgggctttcttgcctaaacatta 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8109978 aagaagaagaacgatacaaacgattctttcgctgttgtttgccaccagaatttctatgggcttttgggctttattcatgggctttcttgcctaaacatta 8110077  T
Q  105 taagagatttgctcttctcccatctgtttttgctcattcctatcgtatatcacattgaaaaaatacatctgcagaagttaactcacgctcggttatttga 204  Q
    ||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||  |||| ||||||| ||||||||||||||    
T  8110078 taagagatttgctattctcccatctatttttgctcattcctatcctatatcacattgaaaaaatacaactgtggaagctaactcatgctcggttatttga 8110177  T
Q  205 tagaaatgagcaaaaacagatggaagaagagcaattaccacattataaaggcccgtgttttagtgttttgaccaacacaannnnnnngaatattccatga 304  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||        ||||||||||||||||||       |||||||||||||    
T  8110178 tagaaataagcaaaaacagatagaagaagagcaattaccacattataaaggccc--------gtgttttgaccaacacaatttttttgaatattccatga 8110269  T
Q  305 atttagtcttactaaaactcgagctaaactttgcaagacttactatcaaaaagttcaaggattaattgtgtctttggttctaacaaaattttattttgta 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||| ||    
T  8110270 atttagtcttactaaaactcgagctaaactttgcaagacttactatcaaaaaggtcaaggattaagtgtgtctttgattctaacaaaaatttattttata 8110369  T
Q  405 aaattgattttgattaaaactaagttaaaactaaagttat 444  Q
    ||||||||||||||||||||| |||| || ||||||||||    
T  8110370 aaattgattttgattaaaactgagttgaagctaaagttat 8110409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 2146792 - 2146728
Alignment:
Q  180 agttaactcacgctcggttatttgatagaaatgagcaaaaacagatggaagaagagcaattacca 244  Q
    |||| |||||||||| | |||||||  ||||| |||||||| |||||| ||||||||||||||||    
T  2146792 agttcactcacgctctgctatttgacggaaataagcaaaaatagatgggagaagagcaattacca 2146728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 450
Target Start/End: Complemental strand, 1758305 - 1758254
Alignment:
Q  399 tttgtaaaattgattttgattaaaactaagttaaaactaaagttatttatat 450  Q
    |||||||||||||||||  |||||| |||||| |||||||||| ||||||||    
T  1758305 tttgtaaaattgattttagttaaaattaagttgaaactaaagtgatttatat 1758254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 240
Target Start/End: Original strand, 33699454 - 33699485
Alignment:
Q  209 aatgagcaaaaacagatggaagaagagcaatt 240  Q
    ||||||||||||||||||||||||||||||||    
T  33699454 aatgagcaaaaacagatggaagaagagcaatt 33699485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 2725849 - 2725907
Alignment:
Q  180 agttaactcacgctcggttattt-gatagaaatgagcaaaaacagatggaagaagagca 237  Q
    ||||||||||||||||| ||||| ||  | ||||||||||||||||||| |||||||||    
T  2725849 agttaactcacgctcggctattttgacgggaatgagcaaaaacagatgggagaagagca 2725907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 144
Target Start/End: Complemental strand, 2725907 - 2725877
Alignment:
Q  114 tgctcttctcccatctgtttttgctcattcc 144  Q
    |||||||||||||||||||||||||||||||    
T  2725907 tgctcttctcccatctgtttttgctcattcc 2725877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 33699491 - 33699453
Alignment:
Q  105 taagagatttgctcttctcccatctgtttttgctcattc 143  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  33699491 taagagaattgctcttcttccatctgtttttgctcattc 33699453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 37442597 - 37442676
Alignment:
Q  164 aaaatacatctgcagaagttaactcacgctcggttatttgatagaaatgagcaaaaacagatggaagaagagcaattacc 243  Q
    ||||||||||||||  ||||||||||||||||| |||||||  | |||||||||||||||||||||||||||||||||||    
T  37442597 aaaatacatctgcatgagttaactcacgctcggctatttgacgggaatgagcaaaaacagatggaagaagagcaattacc 37442676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 32303671 - 32303609
Alignment:
Q  180 agttaactcacgctcggttattt-gatagaaatgagcaaaaacagatggaagaagagcaatta 241  Q
    ||||||||||||||||  ||||| ||   |||||||||||| |||||||||||||||||||||    
T  32303671 agttaactcacgctcgactattttgacgaaaatgagcaaaatcagatggaagaagagcaatta 32303609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 15398344 - 15398421
Alignment:
Q  164 aaaatacatctgcagaagttaactcacgctcggttatttgatagaaatgagcaaaaacagatggaagaagagcaatta 241  Q
    |||||||| |||||  |||| | ||| ||||| ||||||||  | |||||||||||| |||||| |||||||||||||    
T  15398344 aaaatacacctgcatgagttcattcatgctcgattatttgacggtaatgagcaaaaatagatgggagaagagcaatta 15398421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 34398142 - 34398175
Alignment:
Q  207 gaaatgagcaaaaacagatggaagaagagcaatt 240  Q
    ||||||| ||||||||||||||||||||||||||    
T  34398142 gaaatgaccaaaaacagatggaagaagagcaatt 34398175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 9828241 - 9828181
Alignment:
Q  181 gttaactcacgctcggttatttgatagaaatgagcaaaaacagatggaagaagagcaatta 241  Q
    ||||||||||||||   |||||||  | ||||||||||| ||||||| |||||||||||||    
T  9828241 gttaactcacgctctactatttgacgggaatgagcaaaaccagatgggagaagagcaatta 9828181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 34363043 - 34363121
Alignment:
Q  163 aaaaatacatctgcagaagttaactcacgctcggttatttgatagaaatgagcaaaaacagatggaagaagagcaatta 241  Q
    ||||||||||||||  ||||||||| | |||||| |||||||||||||||| |||||||||||||| ||||||||||||    
T  34363043 aaaaatacatctgcgtaagttaacttaagctcggctatttgatagaaatgaacaaaaacagatggatgaagagcaatta 34363121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 12750331 - 12750293
Alignment:
Q  106 aagagatttgctcttctcccatctgtttttgctcattcc 144  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  12750331 aagagaattgctcttctcccatctgtttttgctcattcc 12750293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 38006619 - 38006590
Alignment:
Q  115 gctcttctcccatctgtttttgctcattcc 144  Q
    ||||||||||||||||||||||||||||||    
T  38006619 gctcttctcccatctgtttttgctcattcc 38006590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 33833439 - 33833517
Alignment:
Q  163 aaaaatacatctgcagaagttaactcacgctcggttatttgatagaaatgagcaaaaacagatggaagaagagcaatta 241  Q
    ||||||||| |||||  ||||||| ||||||||| ||||||| || |||||| |||||||||||| |||||||||||||    
T  33833439 aaaaatacacctgcatgagttaacccacgctcggctatttgacaggaatgagtaaaaacagatgggagaagagcaatta 33833517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 8514013 - 8513954
Alignment:
Q  180 agttaactcacgctcggttatttgatagaaatgagcaaaaacagatggaagaagagcaat 239  Q
    ||||||||||| |||| |||||||| || ||||| ||||||||||||| |||||||||||    
T  8514013 agttaactcacactcgattatttgacaggaatgaacaaaaacagatgggagaagagcaat 8513954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 2393897 - 2393933
Alignment:
Q  108 gagatttgctcttctcccatctgtttttgctcattcc 144  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  2393897 gagaattgctcttctcccatatgtttttgctcattcc 2393933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 8513955 - 8513987
Alignment:
Q  113 ttgctcttctcccatctgtttttgctcattcct 145  Q
    |||||||||||||||||||||||| ||||||||    
T  8513955 ttgctcttctcccatctgtttttgttcattcct 8513987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 14994746 - 14994782
Alignment:
Q  108 gagatttgctcttctcccatctgtttttgctcattcc 144  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  14994746 gagaattgctcttctcccatttgtttttgctcattcc 14994782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 145
Target Start/End: Complemental strand, 33833514 - 33833482
Alignment:
Q  113 ttgctcttctcccatctgtttttgctcattcct 145  Q
    ||||||||||||||||||||||| |||||||||    
T  33833514 ttgctcttctcccatctgtttttactcattcct 33833482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 8434238 - 8434299
Alignment:
Q  180 agttaactcacgctcggttatttgatagaaatgagcaaaaacagatggaagaagagcaatta 241  Q
    ||||||| ||||||||||||||||| ||||||||||||||| |||||  |||||||||||||    
T  8434238 agttaacgcacgctcggttatttgacagaaatgagcaaaaaaagatgagagaagagcaatta 8434299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 959160 - 959083
Alignment:
Q  164 aaaatacatctgcagaagttaactcacgctcggttatttgatagaaatgagcaaaaacagatggaagaagagcaatta 241  Q
    |||||||| |||||  |||||||| ||||||| |||||| |  |||||||||||||| |||||| |||||||||||||    
T  959160 aaaatacacctgcatcagttaactgacgctcgattatttaacggaaatgagcaaaaatagatgggagaagagcaatta 959083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 148
Target Start/End: Complemental strand, 42096872 - 42096829
Alignment:
Q  105 taagagatttgctcttctcccatctgtttttgctcattcctatc 148  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||    
T  42096872 taagagaattgctcttctcccatctatttttgctcattcctatc 42096829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 21027963 - 21027934
Alignment:
Q  116 ctcttctcccatctgtttttgctcattcct 145  Q
    ||||||||||||||||||||||||||||||    
T  21027963 ctcttctcccatctgtttttgctcattcct 21027934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 24393615 - 24393644
Alignment:
Q  115 gctcttctcccatctgtttttgctcattcc 144  Q
    ||||||||||||||||||||||||||||||    
T  24393615 gctcttctcccatctgtttttgctcattcc 24393644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 24393722 - 24393686
Alignment:
Q  108 gagatttgctcttctcccatctgtttttgctcattcc 144  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  24393722 gagaattgctcttctcccatatgtttttgctcattcc 24393686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 30097487 - 30097447
Alignment:
Q  180 agttaactcacgctcggttatttgatagaaatgagcaaaaa 220  Q
    ||||||||||||||||  |||||||| ||||||||||||||    
T  30097487 agttaactcacgctcgactatttgatggaaatgagcaaaaa 30097447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 37565998 - 37566034
Alignment:
Q  200 tttgatagaaatgagcaaaaacagatggaagaagagc 236  Q
    ||||||||||||||| |||||||||||||| ||||||    
T  37565998 tttgatagaaatgaggaaaaacagatggaacaagagc 37566034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 37688874 - 37688818
Alignment:
Q  187 tcacgctcggttatttgatagaaatgagcaaaaacagatggaagaagagcaattacc 243  Q
    |||| ||||||||||| |  ||||||| ||||||||||||| |||||| ||||||||    
T  37688874 tcacactcggttatttaacggaaatgaacaaaaacagatgggagaagaacaattacc 37688818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 46080900 - 46080964
Alignment:
Q  179 aagttaactcacgctcggttatttgatagaaatgagcaaaaacagatggaagaagagcaattacc 243  Q
    |||||||||| ||||| | ||| ||| |||||||||||||||||||||  |||||||||||||||    
T  46080900 aagttaactcgcgctccgctatctgaaagaaatgagcaaaaacagatgagagaagagcaattacc 46080964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 3756550 - 3756512
Alignment:
Q  107 agagatttgctcttctcccatctgtttttgctcattcct 145  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  3756550 agagaattgctcttctcccacctgtttttgctcattcct 3756512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 9902224 - 9902195
Alignment:
Q  115 gctcttctcccatctgtttttgctcattcc 144  Q
    ||||||||||||||||||||||||||||||    
T  9902224 gctcttctcccatctgtttttgctcattcc 9902195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 16862862 - 16862826
Alignment:
Q  108 gagatttgctcttctcccatctgtttttgctcattcc 144  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  16862862 gagaattgcttttctcccatctgtttttgctcattcc 16862826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 31756771 - 31756807
Alignment:
Q  108 gagatttgctcttctcccatctgtttttgctcattcc 144  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  31756771 gagaattgctcttctcccatctatttttgctcattcc 31756807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 244
Target Start/End: Original strand, 41909365 - 41909429
Alignment:
Q  180 agttaactcacgctcggttatttgatagaaatgagcaaaaacagatggaagaagagcaattacca 244  Q
    |||||||| ||||| | ||||||||  | |||||| |||||||||||  ||||||||||||||||    
T  41909365 agttaacttacgcttgattatttgacgggaatgagaaaaaacagatgagagaagagcaattacca 41909429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 23253 - 23189
Alignment:
Q  180 agttaactcacgctcggttatttgatagaaatgagcaaaaacagatggaagaagagcaattacca 244  Q
    |||| |||||||||| | |||||||  ||||| |||||||| |||||| ||||||||||||||||    
T  23253 agttcactcacgctctgctatttgacggaaataagcaaaaatagatgggagaagagcaattacca 23189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 32535605 - 32535574
Alignment:
Q  209 aatgagcaaaaacagatggaagaagagcaatt 240  Q
    ||||||||||||||||||||||||||||||||    
T  32535605 aatgagcaaaaacagatggaagaagagcaatt 32535574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 145
Target Start/End: Original strand, 32827729 - 32827760
Alignment:
Q  114 tgctcttctcccatctgtttttgctcattcct 145  Q
    ||||||||||||||||||||||||||||||||    
T  32827729 tgctcttctcccatctgtttttgctcattcct 32827760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 3851856 - 3851819
Alignment:
Q  108 gagatttgctcttctcccatctgtttttgctcattcct 145  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  3851856 gagaattgctcttctctcatctgtttttgctcattcct 3851819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 32815862 - 32815895
Alignment:
Q  200 tttgatagaaatgagcaaaaacagatggaagaag 233  Q
    ||||| ||||||||||||||||||||||||||||    
T  32815862 tttgacagaaatgagcaaaaacagatggaagaag 32815895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 43908998 - 43909030
Alignment:
Q  113 ttgctcttctcccatctgtttttgctcattcct 145  Q
    |||||||||||||||| ||||||||||||||||    
T  43908998 ttgctcttctcccatcagtttttgctcattcct 43909030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University