View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2532_low_9 (Length: 462)
Name: NF2532_low_9
Description: NF2532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2532_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 7499998 - 7499702
Alignment:
| Q |
18 |
tagtttatactgctattgaggagtttttatttactaatgaaatatgctgccatagtaatacaaaaactccatgtgtgatctttccaaactataaaaataa |
117 |
Q |
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| T |
7499998 |
tagtttatactgctattgaggagtttttatttgctaatgaaatatgctgccatagtaatacaaaaactccatgtgtgatctttccaaactataaaaataa |
7499899 |
T |
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| Q |
118 |
aatttcacacgactgaaaaatatttgatctatttcggctgctgagnnnnnnnntaatgggaaaaattattcttcaataacagttcttaagtttctgtggc |
217 |
Q |
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| T |
7499898 |
aatttcacacgactgaaaaatatttgatctatttcggctgctaagaaaaaaaataatgggaaaaattattcttcaataacagttctaaagtttctgtggc |
7499799 |
T |
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| Q |
218 |
tctgaagtctgatctaattgtttatatatggcactatctgttaatacatggctggctttagaatgatgtctcagttttttatgtttcttgatcatgaa |
315 |
Q |
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| T |
7499798 |
tctgaagtctgatctaattgtttatatat-gcactatctgttaatacatggctggttttagaatgatgtctcagttttttatgtttctagatcatgaa |
7499702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 314 - 419
Target Start/End: Complemental strand, 7488416 - 7488311
Alignment:
| Q |
314 |
aacatgtctgatagccatagtctcatgattctttataaaacaataccctatgtaacccttctctcatgtgacaacgtaacacacatcaaacccttctttt |
413 |
Q |
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| T |
7488416 |
aacatgtctgatagtcctaatctcatgatccttcatgaaacaaaaccctatgtaactcttctctcatgtcacaccgtaatacacatcaaatccctctttt |
7488317 |
T |
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| Q |
414 |
ccaaca |
419 |
Q |
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|||||| |
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| T |
7488316 |
ccaaca |
7488311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 171 - 295
Target Start/End: Original strand, 8139017 - 8139134
Alignment:
| Q |
171 |
taatgggaaaaattattcttcaataacagttcttaagtttctgtggctctgaagtctgatctaattg-tttatatatggcactatctgttaatacatggc |
269 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||| ||| ||||||||| ||||| ||| |||||||| ||||||||||||| |
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| T |
8139017 |
taatgggaaaaattattcttccgtaacagttctaaagtttctgtggc-------tctcatctaattgttttatgtat-gcactatcagttaatacatggc |
8139108 |
T |
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| Q |
270 |
tggctttagaatgatgtctcagtttt |
295 |
Q |
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|| |||| |||| ||||||||||||| |
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| T |
8139109 |
tgactttggaattatgtctcagtttt |
8139134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 362 - 420
Target Start/End: Original strand, 6943675 - 6943733
Alignment:
| Q |
362 |
tatgtaacccttctctcatgtgacaacgtaacacacatcaaacccttcttttccaacaa |
420 |
Q |
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| T |
6943675 |
tatgtaacccttctctcatgtgacaacctaatacacatcaaatcccccttttccaacaa |
6943733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 312
Target Start/End: Original strand, 8139168 - 8139198
Alignment:
| Q |
282 |
gatgtctcagttttttatgtttcttgatcat |
312 |
Q |
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| T |
8139168 |
gatgtctcagttttttatgtttcttgatcat |
8139198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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