View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2533_high_2 (Length: 350)
Name: NF2533_high_2
Description: NF2533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2533_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 9872644 - 9872303
Alignment:
| Q |
1 |
gcttttcgcacaccctatgacgcttatgatactctctacaatcactaagatcagagttacatccatcaaccgagcaaatcatactctgcgatccattttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9872644 |
gcttttcgcacaccctatgacgcttatgatactctctacaatcactaagatcagagttacatccatcaaccgagcaaatcatactctgcgatccattttg |
9872545 |
T |
|
| Q |
101 |
taaacgcgatcttttcaacgatccactaggcgacaacgacgatgacacagcttttgaatcttcctttcctgaatcatgaactgatttttccaatgaatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9872544 |
taaacgcgatcttttcaacgatccactaggcgacaacgacgatgacacagcttttgaatcttcctttcctgaatcatgaactgatttttccaatgaatca |
9872445 |
T |
|
| Q |
201 |
gaagcttgatcaccaagcctcaaatccattgaatctccttcattcttcaactcctcatcaaatccagatggatcccaagcaaactctttccaatcccaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9872444 |
gaagcttgatcaccaagcctcaaatccattgaatctccttcattcttcaactcctcatcaaatccagatggatcccaagcaaactctttccaatcccaat |
9872345 |
T |
|
| Q |
301 |
ccataaaaaccaaactaatcacacttcaatactattttcttc |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9872344 |
ccataaaaaccaaactaatcacacttcaatactattttcttc |
9872303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University