View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2533_high_4 (Length: 317)
Name: NF2533_high_4
Description: NF2533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2533_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 305
Target Start/End: Original strand, 40409487 - 40409779
Alignment:
| Q |
10 |
aagaaaatgagtacgtactagtgaatactaaagattacttttagattgcattaacgttggctaatcctttaaatcagaaactgctcttgtcatagacaaa |
109 |
Q |
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| T |
40409487 |
aagaaaatgagtacgtactagtgaatactatagattacttttagattgcattaacgttggctaatcccttaaatcagaaactgctcttgccatagacaaa |
40409586 |
T |
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| Q |
110 |
ttaaattttgtagagcttttgtaggtacgagtatgaattcataaagaagatagtggaaagggccattgaaactgaaaatcacatgctataccaataagtc |
209 |
Q |
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| T |
40409587 |
ttaaa-gttgtagagcttttgtaggtacgagtatgaattcataaagaagatagtggaaagggccattgaagctgaaaatcacatgtgataccaataagtc |
40409685 |
T |
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| Q |
210 |
catgcacaaatgacaacgagaaggaaggtttgagttcctcttacattcaatcataatcaaatcaagatctaggaacacttgtgcagaagaaggtga |
305 |
Q |
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| T |
40409686 |
catgcagaaatgaca--gagaaggaaggtttgagttcctcttacattcaagcatcatcaaatcaagatctaggaacacttgtgcagaagaaggtga |
40409779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 117 - 235
Target Start/End: Complemental strand, 40456857 - 40456739
Alignment:
| Q |
117 |
ttgtagagcttttgtaggtacgagtatgaattcataaagaagatagtggaaagggccattgaaactgaaaatcacatgctataccaataagtccatgcac |
216 |
Q |
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|||||| | ||||||||| |||| |||||||||||||||||||| ||||||||||||| |||| |||||||||||||| |||||||| ||||| || || |
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| T |
40456857 |
ttgtagtgtttttgtaggcacgaatatgaattcataaagaagatcgtggaaagggccaatgaagctgaaaatcacatgtgataccaattagtccttgaac |
40456758 |
T |
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| Q |
217 |
aaatgacaacgagaaggaa |
235 |
Q |
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| T |
40456757 |
aaatgacaacaagaaggaa |
40456739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 232
Target Start/End: Original strand, 40362890 - 40362998
Alignment:
| Q |
124 |
gcttttgtaggtacgagtatgaattcataaagaagatagtggaaagggccattgaaactgaaaatcacatgctataccaataagtccatgcacaaatgac |
223 |
Q |
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||||||||||| |||| ||||||| |||||| |||||||||||||||||||||||| || || |||| ||| |||||||| ||||| ||||||||||| |
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| T |
40362890 |
gcttttgtaggcacgaatatgaatccataaaaaagatagtggaaagggccattgaagctaaatatcaaatgtgataccaattagtccttgcacaaatgat |
40362989 |
T |
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| Q |
224 |
aacgagaag |
232 |
Q |
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||| ||||| |
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| T |
40362990 |
aactagaag |
40362998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 40457066 - 40456962
Alignment:
| Q |
10 |
aagaaaatgagtacgtactagtgaatactaaagattacttttagattgcattaacgttggctaatcctttaaatcagaaactgctcttgtcatagacaaa |
109 |
Q |
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|||||||||||||||||||||| ||||||| | ||||||||||| ||| |||| || ||||||||| ||| ||||||| | ||||||| |||||| |
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| T |
40457066 |
aagaaaatgagtacgtactagtaaatactataaattacttttagtttgtattagtattttctaatccttctaatgagaaactattattgtcatggacaaa |
40456967 |
T |
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| Q |
110 |
ttaaa |
114 |
Q |
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||||| |
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| T |
40456966 |
ttaaa |
40456962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 40362688 - 40362724
Alignment:
| Q |
31 |
tgaatactaaagattacttttagattgcattaacgtt |
67 |
Q |
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| T |
40362688 |
tgaatactatagattacttttagattgcattaacgtt |
40362724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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