View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2533_high_9 (Length: 260)

Name: NF2533_high_9
Description: NF2533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2533_high_9
NF2533_high_9
[»] chr4 (7 HSPs)
chr4 (4-206)||(47113120-47113324)
chr4 (4-195)||(39220269-39220461)
chr4 (4-206)||(236211-236416)
chr4 (4-195)||(39226795-39226989)
chr4 (5-178)||(40053669-40053843)
chr4 (5-178)||(40052443-40052617)
chr4 (51-205)||(34859419-34859576)
[»] chr5 (7 HSPs)
chr5 (4-206)||(35417150-35417355)
chr5 (4-206)||(36100093-36100294)
chr5 (4-206)||(5910984-5911189)
chr5 (4-206)||(5917932-5918137)
chr5 (4-206)||(6751290-6751495)
chr5 (4-195)||(38486414-38486606)
chr5 (4-205)||(41193963-41194166)
[»] chr3 (7 HSPs)
chr3 (4-195)||(29672623-29672815)
chr3 (4-195)||(10567576-10567769)
chr3 (4-195)||(10570826-10571019)
chr3 (4-202)||(20283774-20283972)
chr3 (127-198)||(8547281-8547352)
chr3 (111-200)||(26464348-26464437)
chr3 (98-182)||(21560114-21560198)
[»] chr1 (5 HSPs)
chr1 (4-195)||(16860210-16860402)
chr1 (5-155)||(19406099-19406249)
chr1 (43-205)||(40772345-40772506)
chr1 (4-205)||(26337627-26337829)
chr1 (5-43)||(40772888-40772926)
[»] chr7 (4 HSPs)
chr7 (70-206)||(47018596-47018733)
chr7 (61-200)||(24189596-24189732)
chr7 (51-205)||(39510286-39510441)
chr7 (13-202)||(499661-499849)
[»] chr2 (1 HSPs)
chr2 (38-193)||(20471530-20471689)
[»] chr8 (1 HSPs)
chr8 (38-189)||(21593425-21593571)


Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 47113120 - 47113324
Alignment:
Q  4 ggaataaaatttggatctattttgcgcataaattataaaattataaattagatattaaaagtgtacctttgtatcaattcttgaagcatgaaaattcttc 103  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47113120 ggaataaagtttggatctattttgcgcataaattataaaattataaattagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaattcttc 47113219  T
Q  104 aatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactagaaaac--tagagcatatttctattttg 201  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||    
T  47113220 aatgatatgaagactctatgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactaaaaaactatagagcatatttctattttg 47113319  T
Q  202 tattc 206  Q
    |||||    
T  47113320 tattc 47113324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 4 - 195
Target Start/End: Complemental strand, 39220461 - 39220269
Alignment:
Q  4 ggaataaaatttggatctattttgcgcataaattataaaattataaattagatattaaaagtgtacctttgtatcaattcttgaagcatgaaaattcttc 103  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39220461 ggaataaagtttggatctattttgcgcataaattataaaattataaattagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaattcttc 39220362  T
Q  104 aatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactag-aaaactagagcatatttct 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  39220361 aatgatatgaagactctacgtgtatccacaccgagaccaattcttactctcaacctttgagtagtggaactagaaaaactagagcatatttct 39220269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 236416 - 236211
Alignment:
Q  4 ggaataaaatttggatctattttgcgcataaattataaaattataaattagatattaaaagtgtacctttgtatcaattcttgaagcatgaaaa-ttctt 102  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  236416 ggaataaagtttggatctattttgcgcttaaattataaaattataaattagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaaattctt 236317  T
Q  103 caatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaact--agaaaactagagcatatttctatttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||    
T  236316 caatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactaaaaaaaactagagcatatttctatttt 236217  T
Q  201 gtattc 206  Q
    ||||||    
T  236216 gtattc 236211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 4 - 195
Target Start/End: Complemental strand, 39226989 - 39226795
Alignment:
Q  4 ggaataaaatttggatctattttgcgcataaattataaaattat--aaattagatattaaaagtgtacctttgtatcaattcttgaagcatgaaaattct 101  Q
    |||||||| |||||||||||||||||||||||||||||||||    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39226989 ggaataaagtttggatctattttgcgcataaattataaaatttacgaaattagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaattct 39226890  T
Q  102 tcaatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactag-aaaactagagcatatttct 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  39226889 tcaatgatatgaagactctacgtgtatccacaccgagaccaattcttactctcaacctttgagtagtggaactagaaaaactagagcatatttct 39226795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 40053843 - 40053669
Alignment:
Q  5 gaataaaatttggatctattttgcgcataaattataaaattataaattagatattaaaagtgtacctttgtatcaattcttgaagcatgaaaa-ttcttc 103  Q
    ||||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  40053843 gaataaagtttggatctattttgcgcttaaattataaaattgtaaattagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaaattcttc 40053744  T
Q  104 aatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactagaa 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40053743 aatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactagaa 40053669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 40052443 - 40052617
Alignment:
Q  5 gaataaaatttggatctattttgcgcataaattataaaattataaattagatattaaaagtgtacctttgtatcaattcttgaagcatgaaaa-ttcttc 103  Q
    ||||||| |||||||||||||||||| |||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||    
T  40052443 gaataaagtttggatctattttgcgcttaaattataaaattgtaaattagatacaaaaagtgtacctttgtatcaattcttgaagcatgaaaaattcttc 40052542  T
Q  104 aatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactagaa 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40052543 aatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactagaa 40052617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 205
Target Start/End: Complemental strand, 34859576 - 34859419
Alignment:
Q  51 ttagatattaaaagtgtacctttgtatcaattcttgaagcatgaaaa-ttcttca--atgatatgaagactctacgtgtatccacaccgagaccaattct 147  Q
    ||||||||||||| |||| |||||||| |||| |||| |  |||||| |||||||  | | | ||||||||||||||||||||||||||| | ||||| |    
T  34859576 ttagatattaaaaatgtatctttgtattaatttttgatgtctgaaaaattcttcacaaagttgtgaagactctacgtgtatccacaccgataacaattat 34859477  T
Q  148 taccctcaacctttgagtagtggaactagaaaactagagcatatttctattttgtatt 205  Q
    ||| |||||| | |||||||| |||  ||||||||||||||||||| | |||||||||    
T  34859476 tactctcaacttctgagtagtagaagaagaaaactagagcatatttgtgttttgtatt 34859419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 35417150 - 35417355
Alignment:
Q  4 ggaataaaatttggatctattttgcgcataaattataaaatt-ataaattagatattaaaagtgtacctttgtatcaattcttgaagcatgaaaattctt 102  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35417150 ggaataaagtttggatctattttgcgcataaattataaaatttataaattagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaattctt 35417249  T
Q  103 caatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaact--agaaaactagagcatatttctatttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||    
T  35417250 caatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactaaaaaaaactagagcatatttctatttt 35417349  T
Q  201 gtattc 206  Q
    ||||||    
T  35417350 gtattc 35417355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 36100093 - 36100294
Alignment:
Q  4 ggaataaaatttggatctattttgcgcataaattataaaattataaattagatattaaaagtgtacctttgtatcaattcttgaagcatgaaaattcttc 103  Q
    |||||||| |||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36100093 ggaataaagtttggatctattttgcgcataaattataaa-ttataaattaaatactaaaagtgtacctttgtatcaattcttgaagcatgaaaattcttc 36100191  T
Q  104 aatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactagaaaactagagcatatttctattttgta 203  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36100192 aatgatatgaagactctacatgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactagaaaactagaacatatttctattttgta 36100291  T
Q  204 ttc 206  Q
    |||    
T  36100292 ttc 36100294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 5910984 - 5911189
Alignment:
Q  4 ggaataaaatttggatctattttgcgcataaattataaaatt-ataaattagatattaaaagtgtacctttgtatcaattcttgaagcatgaaaattctt 102  Q
    |||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5910984 ggaataaagtttggatctattttgcgtataaattataaaatttataaattagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaattctt 5911083  T
Q  103 caatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaact--agaaaactagagcatatttctatttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  | ||||||||||||||||||||||||    
T  5911084 caatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttaagtagtggaactaaaaaaaactagagcatatttctatttt 5911183  T
Q  201 gtattc 206  Q
    ||||||    
T  5911184 gtattc 5911189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 5917932 - 5918137
Alignment:
Q  4 ggaataaaatttggatctattttgcgcataaattataaaatt-ataaattagatattaaaagtgtacctttgtatcaattcttgaagcatgaaaattctt 102  Q
    |||||||| ||||||||||||||||  ||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  5917932 ggaataaagtttggatctattttgcatataaattataaaatttataaattagatactaaaagtgtacttttgtatcaattcttgaagcatgaaaattctt 5918031  T
Q  103 caatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaact--agaaaactagagcatatttctatttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||    
T  5918032 caatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactaaaaaaaactagagcatatttctatttt 5918131  T
Q  201 gtattc 206  Q
    ||||||    
T  5918132 gtattc 5918137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 6751495 - 6751290
Alignment:
Q  4 ggaataaaatttggatctattttgcgcataaattataaaatt-ataaattagatattaaaagtgtacctttgtatcaattcttgaagcatgaaaattctt 102  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6751495 ggaataaagtttggatctattttgcgcataaattataaaatttataaattagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaattctt 6751396  T
Q  103 caatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaact--agaaaactagagcatatttctatttt 200  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||| ||||||    
T  6751395 caatgatataaagactctatgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactaaaaaaaactagagcatatttttatttt 6751296  T
Q  201 gtattc 206  Q
    ||||||    
T  6751295 gtattc 6751290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 4 - 195
Target Start/End: Complemental strand, 38486606 - 38486414
Alignment:
Q  4 ggaataaaatttggatctattttgcgcataaattataaaattataaattagatattaaaagtgtacctttgtatcaattcttgaagcatgaaaa-ttctt 102  Q
    |||||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  38486606 ggaataaagtttggatctattttgcgcttaaattataaaattgtaaattagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaaattctt 38486507  T
Q  103 caatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactagaaaactagagcatatttct 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  38486506 caatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactgaaaaactagagcatatttct 38486414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 41193963 - 41194166
Alignment:
Q  4 ggaataaaatttggatctattttgcgcataaattataaaattataaattagatattaaaagtgtacctttgtatcaattcttgaagcatg-aaaattctt 102  Q
    |||||||| |||||||||||||||| | ||||||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||||| |||||||||    
T  41193963 ggaataaagtttggatctattttgcacttaaattataaaattataaatttgatattaaaagtgtgcatttgtatcaattcttaaagcatgaaaaattctt 41194062  T
Q  103 caatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactag-aaaactagagcatatttctattttg 201  Q
     || ||| ||||||||||| ||||||| ||||||||| |||||||||| |||||||||||||||||||||| || ||||||||||||||||| | |||||    
T  41194063 taaagatgtgaagactctaagtgtatctacaccgagatcaattcttactctcaacctttgagtagtggaacaagaaaaactagagcatatttatgttttg 41194162  T
Q  202 tatt 205  Q
    ||||    
T  41194163 tatt 41194166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 29672623 - 29672815
Alignment:
Q  4 ggaataaaatttggatctattttgcgcataaattataaaattataaattagatattaaaagtgtacctttgtatcaattcttgaagcatgaa-aattctt 102  Q
    |||||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  29672623 ggaataaagtttggatctattttgcgcttaaattataaaattgtaaattagatactaaaagtgtacctttgtatcaattcttgaagcatgaagaattctt 29672722  T
Q  103 caatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactagaaaactagagcatatttct 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29672723 caatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactagaaaactagagcatatttct 29672815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 4 - 195
Target Start/End: Complemental strand, 10567769 - 10567576
Alignment:
Q  4 ggaataaaatttggatctattttgcgcataaattataaaattat--aaattagatattaaaagtgtacctttgtatcaattcttgaagcatgaaaattct 101  Q
    |||||||| |||||||||||||||||||||||||||||||||    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10567769 ggaataaagtttggatctattttgcgcataaattataaaatttacgaaattagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaattct 10567670  T
Q  102 tcaatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactagaaaactagagcatatttct 195  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10567669 tcaatgatatgaagactctacgtgtatccacaccgagaccaatttttactctcaacctttgagtagtggaactagaaaactagagcatatttct 10567576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 4 - 195
Target Start/End: Complemental strand, 10571019 - 10570826
Alignment:
Q  4 ggaataaaatttggatctattttgcgcataaattataaaattat--aaattagatattaaaagtgtacctttgtatcaattcttgaagcatgaaaattct 101  Q
    |||||||| |||||||||||||||||||||||||||||||||    |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10571019 ggaataaagtttggatctattttgcgcataaattataaaatttacgaaattagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaattct 10570920  T
Q  102 tcaatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactagaaaactagagcatatttct 195  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10570919 tcaatgatatgaagactctacgtgtatccacaccgagaccaatttttactctcaacctttgagtagtggaactagaaaactagagcatatttct 10570826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 20283972 - 20283774
Alignment:
Q  4 ggaataaaatttggatctattttgcgcataaattataaaattataaatta-gatattaaaagtgtacctttgtatcaattcttgaagcatgaaaa-ttct 101  Q
    |||||||| |||||||||||||||| | |||||||||||| | || |||| ||||  | |||||||||||||||||||||||||||||||||||| ||||    
T  20283972 ggaataaagtttggatctattttgcacttaaattataaaaat-tatattaagatacaagaagtgtacctttgtatcaattcttgaagcatgaaaaattct 20283874  T
Q  102 tcaatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactagaaaactagagcatatttctattttg 201  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||| |||||||    
T  20283873 tcaatgatatgaagactctacgtatatccacaccgagaccaattcttaccctcagcctttgagtagttgaacaagaaaactagagcatattt-tattttg 20283775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 8547352 - 8547281
Alignment:
Q  127 atccacaccgagaccaattcttaccctcaacctttgagtagtggaactagaaaactagagcatatttctatt 198  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8547352 atccacaccgagaccaattcttaccctcaacctttgagtagaggaactagaaaactagagcatatttctatt 8547281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 200
Target Start/End: Complemental strand, 26464437 - 26464348
Alignment:
Q  111 tgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactagaaa-actagagcatatttctatttt 200  Q
    |||||||||||||||||||||||| ||||| |||||||||  ||||| ||||||||||||||| ||||| |||||||||||||| ||||||    
T  26464437 tgaagactctacgtgtatccacactgagacaaattcttactttcaacttttgagtagtggaac-agaaatactagagcatatttgtatttt 26464348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 21560114 - 21560198
Alignment:
Q  98 ttcttcaatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactagaaaact 182  Q
    ||||| || ||| |||| ||| ||||||||||||| ||||||||||||||||||||||| |||||| ||||| ||| | ||||||    
T  21560114 ttctttaaagatgtgaaaactttacgtgtatccacgccgagaccaattcttaccctcaatctttgaatagtgaaacaaaaaaact 21560198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 16860210 - 16860402
Alignment:
Q  4 ggaataaaatttggatctattttgcgcataaattataaaattataaattagatattaaaagtgtacctttgtatcaattcttgaagcatgaaaa-ttctt 102  Q
    |||||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  16860210 ggaataaagtttggatctattttgcgcttaaattataaaattgtaaattagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaaattctt 16860309  T
Q  103 caatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactagaaaactagagcatatttct 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16860310 caatgatatgaagactctacgtgtatccacaccgagaccaattcttacgctcaacctttgagtagtggaactagaaaactagagcatatttct 16860402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 5 - 155
Target Start/End: Complemental strand, 19406249 - 19406099
Alignment:
Q  5 gaataaaatttggatctattttgcgcataaattataaaattataaattagatattaaaagtgtacctttgtatcaattcttgaagcatgaaaa-ttcttc 103  Q
    ||||||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  19406249 gaataaagtttggatctattttgcgcttaaattataaa-ttataaattagatactaaaagtgtacctttgtatcaattcttgaagcatgaaaaattcttc 19406151  T
Q  104 aatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctca 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19406150 aatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctca 19406099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 43 - 205
Target Start/End: Complemental strand, 40772506 - 40772345
Alignment:
Q  43 attataaattagatattaaaagtgtacctttgtatcaattcttgaagcatga-aaattcttcaatgatatgaagactctacgtgtatccacaccgagacc 141  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| ||  ||    
T  40772506 attataaattagatactaaaagtgtacctttgtatcaattcttgaagcatgagaaattcttcaaagatgtgaagactctacgtgtatccacactga--cc 40772409  T
Q  142 aattcttaccctcaacctttgagtagtggaactagaaaactagagcatatttctattttgtatt 205  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||| ||| | |||||||||    
T  40772408 aattcttaccctcaacctttgagtagtggaacaataaaactagagcatgtttatgttttgtatt 40772345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 26337627 - 26337829
Alignment:
Q  4 ggaataaaatttggatctattttgcgcataaattataaaa-ttataaattagatattaaaagtgtacctttgtatcaattcttgaagcatgaaaattc-t 101  Q
    ||||| || ||| ||| |||||||||  |||||||||||| ||||| || |||||  |||||| ||||||||||| || |||||||||| |||||    |    
T  26337627 ggaatgaagtttagatttattttgcgtttaaattataaaaattatagat-agatacaaaaagtatacctttgtataaactcttgaagcacgaaaaaaaat 26337725  T
Q  102 tcaatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactagaaaactagagcatatttctattttg 201  Q
    |||| ||| ||||||||||||  ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||| ||||||| | |||||    
T  26337726 tcaaagatgtgaagactctactggtatccacaccgagaccaattcttaacctcaacctttaagtagtggaacaagaaaacaagaacatatttgtgttttg 26337825  T
Q  202 tatt 205  Q
    ||||    
T  26337826 tatt 26337829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 40772926 - 40772888
Alignment:
Q  5 gaataaaatttggatctattttgcgcataaattataaaa 43  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  40772926 gaataaagtttggatctattttgcgcttaaattataaaa 40772888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 7e-58; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 70 - 206
Target Start/End: Original strand, 47018596 - 47018733
Alignment:
Q  70 ctttgtatcaattcttgaagcatgaaaa-ttcttcaatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagt 168  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||    
T  47018596 ctttgtattaattcttgaagcatgaaaaattcttcaatgatatgaagactttaggtgtatccacaccgagatcaattcttaccctcaacctttgagtagt 47018695  T
Q  169 ggaactagaaaactagagcatatttctattttgtattc 206  Q
    ||||||||||||||||||||||||||||||||||||||    
T  47018696 ggaactagaaaactagagcatatttctattttgtattc 47018733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 24189732 - 24189596
Alignment:
Q  61 aaagtgtacctttgtatcaattcttgaagcatgaaaa-ttcttcaatgatatgaagactctacgtgtatccacaccgagaccaattcttaccctcaacct 159  Q
    |||||||| ||| |||||||||||||||||| ||||| ||||| || ||| |||||||  |    ||||||||||| ||||||||||||||| |||| ||    
T  24189732 aaagtgtaacttcgtatcaattcttgaagcaggaaaaattctttaaagatgtgaagacaat----gtatccacaccaagaccaattcttaccttcaatct 24189637  T
Q  160 ttgagtagtggaactagaaaactagagcatatttctatttt 200  Q
    |||| ||||||||| ||||||||||||||||||| ||||||    
T  24189636 ttgattagtggaacaagaaaactagagcatatttatatttt 24189596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 205
Target Start/End: Original strand, 39510286 - 39510441
Alignment:
Q  51 ttagatattaaaagtgtacctttgtatcaattcttgaagcatgaaaattctt-caatgatatgaagactctacgtgtatccacaccgagaccaattctta 149  Q
    |||||||| ||||||||  ||||||||||||||||||||||| ||  || || |||  || | |||||| |||||||||||||| ||| |||||||||||    
T  39510286 ttagatatcaaaagtgtgtctttgtatcaattcttgaagcataaattttttttcaaaaatgtaaagactttacgtgtatccacatcgaaaccaattctta 39510385  T
Q  150 ccctcaacctttgagtagtggaactagaaaactagagcatatttctattttgtatt 205  Q
    |  |||||||||||||| | |||| | |||||||||||||| || |||||||||||    
T  39510386 cattcaacctttgagtattagaacaaaaaaactagagcataattgtattttgtatt 39510441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 499849 - 499661
Alignment:
Q  13 tttggatctattttgcgcataaattataaaat-tataaattagatattaaaagtgtacctttgtatcaa-ttcttgaagcatgaaaa-ttcttcaatgat 109  Q
    ||||||| |||||||||| ||||||||||||  ||||  ||| ||| ||||||||||| ||| ||| || ||||| ||||||||||| ||||  ||  ||    
T  499849 tttggatatattttgcgcttaaattataaaaactatat-ttaaatactaaaagtgtac-tttctattaaattcttaaagcatgaaaaattctataaaaat 499752  T
Q  110 atgaagactctacgtgtatccacaccgagaccaattcttaccctcaacctttgagtagtggaactagaaaactagagcatatttctattttgt 202  Q
    ||||||||||||||| |||| ||||  |||||| ||||||| ||||||||||||||| |||||| ||||||||   |||||||| ||||||||    
T  499751 atgaagactctacgtatatctacactaagaccagttcttacactcaacctttgagtaatggaacaagaaaact--tgcatatttgtattttgt 499661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 38 - 193
Target Start/End: Complemental strand, 20471689 - 20471530
Alignment:
Q  38 ataaaattataaatt-agatattaaaagtgtacctttgtatcaattcttgaagcatgaaaattcttcaatgatatgaagactctacgtgtatccacaccg 136  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | || ||||||||||||||||||||||||||||||    
T  20471689 ataaaattataaatttagatattaaaagtgtacctttgtatcaattcttgaagcataaaaattcattaaagatatgaagactctacgtgtatccacaccg 20471590  T
Q  137 agaccaattc---ttaccctcaacctttgagtagtggaactagaaaactagagcatattt 193  Q
     |||||||||   |||| ||||||||||||| |||||||| |||||||||||||||||||    
T  20471589 tgaccaattcttattactctcaacctttgagcagtggaacaagaaaactagagcatattt 20471530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 38 - 189
Target Start/End: Complemental strand, 21593571 - 21593425
Alignment:
Q  38 ataaaattataaatt-agatattaaaagtgtacctttgtatcaattcttgaagcatgaaaa-ttcttcaatgatatgaagactctacgtgtatccacacc 135  Q
    ||||||||||||||| ||||| ||||||||||||| | |||||||||||||||||| |||| |||||||| ||||||||||||       ||| ||||||    
T  21593571 ataaaattataaatttagatactaaaagtgtacctctatatcaattcttgaagcataaaaaattcttcaaagatatgaagact-------tatacacacc 21593479  T
Q  136 gagaccaattcttaccctcaacctttgagtagtggaactagaaaactagagcat 189  Q
    ||||||||||||||| ||||||||||||||| |||||| |||||||||||||||    
T  21593478 gagaccaattcttactctcaacctttgagtattggaacaagaaaactagagcat 21593425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University