View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2533_low_10 (Length: 261)

Name: NF2533_low_10
Description: NF2533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2533_low_10
NF2533_low_10
[»] chr1 (5 HSPs)
chr1 (18-237)||(44855403-44855621)
chr1 (122-171)||(21980208-21980257)
chr1 (231-261)||(26434980-26435010)
chr1 (229-261)||(3263991-3264023)
chr1 (20-92)||(41914924-41914996)
[»] chr6 (3 HSPs)
chr6 (109-172)||(11076125-11076188)
chr6 (224-261)||(28930754-28930791)
chr6 (229-261)||(11322315-11322347)
[»] chr3 (2 HSPs)
chr3 (109-173)||(23215483-23215547)
chr3 (232-261)||(44184261-44184290)
[»] scaffold0056 (1 HSPs)
scaffold0056 (152-234)||(59845-59926)
[»] chr2 (3 HSPs)
chr2 (108-152)||(26457221-26457265)
chr2 (228-261)||(17798838-17798871)
chr2 (233-261)||(1466805-1466833)
[»] chr8 (3 HSPs)
chr8 (227-261)||(42906664-42906698)
chr8 (232-261)||(414661-414690)
chr8 (233-261)||(2321807-2321835)
[»] chr5 (1 HSPs)
chr5 (132-165)||(13352973-13353006)
[»] chr4 (3 HSPs)
chr4 (224-261)||(104186-104223)
chr4 (232-261)||(13019267-13019296)
chr4 (20-92)||(29343685-29343757)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 44855621 - 44855403
Alignment:
Q  18 atatattgtattaaatttaagggaagaaaattttgaaatatgtgagggtccatactattaagttattgtcttttttatattaannnnnnnattatcattc 117  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||       ||||||||||    
T  44855621 atatattgtattgaatttaagggaagaaaatttcgaaatatgtgagggtccatactcttaagttattgtcttttttatattaatttttttattatcattc 44855522  T
Q  118 atctacaggttccatgagatcaaggacaccactatatcattgagttatgaattaacacatgaaatagatctacctcatctttttatcacaactattttaa 217  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  44855521 atctacaggttccatgagatcaaggacactactatatcattgagttatgaattaacacgtgaaatagatctacctcatc-ttttatcacaactattttaa 44855423  T
Q  218 caactgtattattatttatt 237  Q
    ||||||||||||||||||||    
T  44855422 caactgtattattatttatt 44855403  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 21980208 - 21980257
Alignment:
Q  122 acaggttccatgagatcaaggacaccactatatcattgagttatgaatta 171  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  21980208 acaggttccatgagatgaaggacaccactatattattgagttatgaatta 21980257  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 261
Target Start/End: Complemental strand, 26435010 - 26434980
Alignment:
Q  231 atttattggcttaattgcacttttggacccc 261  Q
    |||||||||||||||||||||||||||||||    
T  26435010 atttattggcttaattgcacttttggacccc 26434980  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 3263991 - 3264023
Alignment:
Q  229 ttatttattggcttaattgcacttttggacccc 261  Q
    |||||| ||||||||||||||||||||||||||    
T  3263991 ttattttttggcttaattgcacttttggacccc 3264023  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 41914996 - 41914924
Alignment:
Q  20 atattgtattaaatttaagggaagaaaattttgaaatatgtgagggtccatactattaagttattgtcttttt 92  Q
    |||||| ||| | ||| ||||||||||| ||  ||| ||||||| ||||||||| ||| ||||||||||||||    
T  41914996 atattgcattgagttttagggaagaaaaattctaaaaatgtgagtgtccatactcttacgttattgtcttttt 41914924  T

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Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 109 - 172
Target Start/End: Original strand, 11076125 - 11076188
Alignment:
Q  109 ttatcattcatctacaggttccatgagatcaaggacaccactatatcattgagttatgaattaa 172  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11076125 ttatcattcatttacaggttccatgagatcaaggacaccactatatcattgagttatgaattaa 11076188  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 28930791 - 28930754
Alignment:
Q  224 tattattatttattggcttaattgcacttttggacccc 261  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  28930791 tattatttttttttggcttaattgcacttttggacccc 28930754  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 261
Target Start/End: Complemental strand, 11322347 - 11322315
Alignment:
Q  229 ttatttattggcttaattgcacttttggacccc 261  Q
    |||||||| ||||||||||||||||||||||||    
T  11322347 ttatttataggcttaattgcacttttggacccc 11322315  T

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Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 23215547 - 23215483
Alignment:
Q  109 ttatcattcatctacaggttccatgagatcaaggacaccactatatcattgagttatgaattaac 173  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23215547 ttatcattcatttacaggttccatgagatcaaggacaccactatatcaatgagttatgaattaac 23215483  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 261
Target Start/End: Complemental strand, 44184290 - 44184261
Alignment:
Q  232 tttattggcttaattgcacttttggacccc 261  Q
    ||||||||||||||||||||||||||||||    
T  44184290 tttattggcttaattgcacttttggacccc 44184261  T

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Target: scaffold0056 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 59845 - 59926
Alignment:
Q  152 tatcattgagttatgaattaacacatgaaatagatctacctcatctttttatcacaactattttaacaactgtattattattt 234  Q
    ||||||||| ||||||||||||  ||||||||| ||||| ||||| ||||||||||||||||||||||| ||||| |||||||    
T  59845 tatcattgaattatgaattaaccaatgaaatagctctacttcatc-ttttatcacaactattttaacaattgtatcattattt 59926  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 26457221 - 26457265
Alignment:
Q  108 attatcattcatctacaggttccatgagatcaaggacaccactat 152  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||    
T  26457221 attatcaatcatttacaggttccatgagatcaaggacaccactat 26457265  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 261
Target Start/End: Original strand, 17798838 - 17798871
Alignment:
Q  228 attatttattggcttaattgcacttttggacccc 261  Q
    |||| |||||||||||||||||||||||||||||    
T  17798838 attaattattggcttaattgcacttttggacccc 17798871  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Original strand, 1466805 - 1466833
Alignment:
Q  233 ttattggcttaattgcacttttggacccc 261  Q
    |||||||||||||||||||||||||||||    
T  1466805 ttattggcttaattgcacttttggacccc 1466833  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 261
Target Start/End: Complemental strand, 42906698 - 42906664
Alignment:
Q  227 tattatttattggcttaattgcacttttggacccc 261  Q
    |||||||||| ||||||||||||||||||||||||    
T  42906698 tattatttataggcttaattgcacttttggacccc 42906664  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 261
Target Start/End: Original strand, 414661 - 414690
Alignment:
Q  232 tttattggcttaattgcacttttggacccc 261  Q
    ||||||||||||||||||||||||||||||    
T  414661 tttattggcttaattgcacttttggacccc 414690  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Complemental strand, 2321835 - 2321807
Alignment:
Q  233 ttattggcttaattgcacttttggacccc 261  Q
    |||||||||||||||||||||||||||||    
T  2321835 ttattggcttaattgcacttttggacccc 2321807  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 13352973 - 13353006
Alignment:
Q  132 tgagatcaaggacaccactatatcattgagttat 165  Q
    |||||| |||||||||||||||||||||||||||    
T  13352973 tgagatgaaggacaccactatatcattgagttat 13353006  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 104186 - 104223
Alignment:
Q  224 tattattatttattggcttaattgcacttttggacccc 261  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  104186 tattattatttttaggcttaattgcacttttggacccc 104223  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 232 - 261
Target Start/End: Original strand, 13019267 - 13019296
Alignment:
Q  232 tttattggcttaattgcacttttggacccc 261  Q
    ||||||||||||||||||||||||||||||    
T  13019267 tttattggcttaattgcacttttggacccc 13019296  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 29343757 - 29343685
Alignment:
Q  20 atattgtattaaatttaagggaagaaaattttgaaatatgtgagggtccatactattaagttattgtcttttt 92  Q
    |||||| ||| | ||| ||||||||||| ||  ||| ||||||| ||||||||| ||| ||||||||||||||    
T  29343757 atattgcattgagttttagggaagaaaaattctaaaaatgtgagtgtccatactcttacgttattgtcttttt 29343685  T

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