View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2533_low_12 (Length: 253)
Name: NF2533_low_12
Description: NF2533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2533_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 44062092 - 44062330
Alignment:
| Q |
15 |
agattcaactctttggcactaaagggatcatctcatatccaggaaatatgcgacgcaattagtaaaatagagttgagttttgaatattatcaacttctta |
114 |
Q |
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| T |
44062092 |
agattcaactctttggcactaaagggatcatctcatatccaggaaatacgcgacgcaattagtaaaatagagttgagttttgaatattatcaacttctta |
44062191 |
T |
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| Q |
115 |
cattgatggatatcaaggctctaagatttgcaggatgtgacatagaaacactgcaggagctgatgaaggagtttcgagatttaaatttctctttcaacga |
214 |
Q |
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| T |
44062192 |
cattgatggatatcaaggctctaagatttgcaggatgtgacatagaaacactgcaggagctgatgaaggagtttcgagatttaaatttctcgttcaacga |
44062291 |
T |
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| Q |
215 |
ataccagggaacgcttggcggaatatataaattaaaatc |
253 |
Q |
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| T |
44062292 |
ataccagggaacgcttggcggaatatataaattaaaatc |
44062330 |
T |
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